Romboutsia hominis: FRIFI_0803
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Entry
FRIFI_0803 CDS
T10242
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhom Romboutsia hominis
Pathway
rhom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRIFI_0803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhom03019
]
FRIFI_0803
03009 Ribosome biogenesis [BR:
rhom03009
]
FRIFI_0803
Enzymes [BR:
rhom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRIFI_0803
Messenger RNA biogenesis [BR:
rhom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRIFI_0803
Ribosome biogenesis [BR:
rhom03009
]
Prokaryotic type
rRNA helicases
FRIFI_0803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CEI72347
UniProt:
A0A2P2BPU7
LinkDB
All DBs
Position
1:complement(868049..869161)
Genome browser
AA seq
370 aa
AA seq
DB search
MNFEELGISKDLVNVLKNRGINSPTPIQKESIGFIKSGKDVIAEAQTGTGKTLAFLLPIF
ENINPNANYVQALILSPTRELAIQITEQAIELSKGKNINVLSAYGGKDIAGQLKKLKGNI
HLIVATPGRLLDHLDRKTVNLSKLKTFVLDEADQMLFMGFKNEVEAILKEVPKKRQTLCF
SATMNSQVKKLAYRYMTNPVVVSIEKEEITLENINQEVVETTDRRKQDALCSVLDKDNPF
LAIIFCRTKRRADALDEALCQRGYNCAKLHSDIPQSKRERIMKSFRNADIQYLIATDVAS
RGIDVTGVTHVYNYDIPETSEDYIHRIGRTGRAGKKGYTCLFVAPKDERYLEQIENAIQY
TIPRREIDNN
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaagaacttggaattagtaaagatttagtaaatgtactaaaaaatagggga
attaactctcctacacctatacaaaaagaaagtattggatttataaagtctggaaaagat
gttatagcagaagctcaaactggtacgggaaaaactctagcatttttacttcctatattt
gaaaatattaatccaaacgctaattatgttcaagcacttatattgtcaccaacaagagag
ttagctattcaaataactgaacaagccattgaactttcaaaaggtaagaatataaatgta
ttatcagcttatggtggaaaagatatagcaggtcaattaaaaaagttaaagggaaatata
caccttatagtagctacaccaggaagacttttagatcacttagatagaaaaactgtaaat
cttagtaagttaaaaacttttgtactagatgaagctgaccaaatgttatttatgggattt
aaaaatgaagttgaagctatattaaaggaggttcctaaaaagcgtcaaacattgtgtttc
tccgctactatgaactcacaagttaaaaaattagcttatagatatatgactaatcctgtt
gttgtatctatagaaaaagaagaaataacacttgaaaatataaatcaagaagttgtagaa
actacagatagaagaaaacaagatgcactatgttctgtacttgataaagataatcctttt
ttagctataatcttctgtagaaccaaaagaagagcagatgctttagatgaagcactttgt
caaagagggtataattgtgctaaacttcacagcgacatccctcaatcaaaacgtgaaaga
attatgaaatcttttagaaatgcagatatacaatatcttatagctactgatgttgcatct
agaggtattgatgttactggtgttactcatgtatataactatgatataccagaaacttca
gaagactacatacatcgtattggtagaactggtagagctggtaaaaaaggttatacttgt
ctatttgttgccccaaaagatgaaagatatttagagcaaattgaaaatgctattcaatat
actatcccaagaagagaaatagataataactaa
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