Rhodococcus sp. NJ-530: EHW12_04030
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Entry
EHW12_04030 CDS
T11349
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhon Rhodococcus sp. NJ-530
Pathway
rhon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EHW12_04030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhon03400
]
EHW12_04030
Enzymes [BR:
rhon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EHW12_04030
DNA repair and recombination proteins [BR:
rhon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EHW12_04030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZI60380
LinkDB
All DBs
Position
863391..866708
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AA seq
1105 aa
AA seq
DB search
MDFDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARVEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLFGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVALLGGDARLAVDGDP
RPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTSEELDKDGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETN
LEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVGGQEG
PGYNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVHWSRAAADVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTTTGSEVEDPEKDDEPEDSVDLGSITPSPLEAFPSPM
NGLPAGAAFGTLVHEVLEVVDTAVADLRAELGMRCAEAVSVRAAEVDSEALADALYLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLSSDDILASYA
DYLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRIGRGDLTAANYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
gtggacttcgatcttctggggccactgccgaccggcaccacggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggcctc
gctgacatttcgcaagttctgctggtgacattcagtagggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgcgggagtgtccgccgctctggtcgacccggaggcggcg
aggcggtcggatgatgatctggtggcgtacctcgccacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgacc
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccg
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttctccacgaaggacgcgctggcc
atcgcccgaagcgcagtcggtgatggtcaggcaattctcgaacccgacggcgaggaggag
accgcacccggtcagcgcgtcctcttcgcggctgctgctcgtgtcgaggtcgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctgctgacgctgttgcacggtgtattg
acggatccggaatacggtcccgtcgcgtgtcgtcgggtgcgcgaaaagttcaaggttgtg
ttgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcggttggccttc
cacggtcacaccaccctggtcctggtcggtgatcccaaacaagccatctatgcgttccgc
ggggcagaagtcctgagttatctcgatgcggtcgatcaggcggatgcgcaccaggagttg
accaccaattggcgtagcgacccagggttgttggcggcactcgaacacctctacggtggt
gccgcactcggcaacgaaggcatcgtcgcgcatccggtggaggcttcgcacaagaagtct
cggttgttcggcccggtgccgatgcgtgtgcgccatctgccccgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtaggcagacttcgcagtcgcgtcgcggacgacgtc
gcagcagacgtggtcgcgctcctgggcggcgatgcccgcttggcagtcgacggtgatcca
cgcccggtcgaaccgggagacgtcgcggtgttggtgcgcacccacaagcacgtggcgatg
atccgcgatgctctcgatgccgtcggtgtaccttccgtattgaccggagggtccagtgtt
ttcgcgacacccagtgcgacccagtggctgtggctgttgcaggcgatcgagcagccccat
cgctccgatcgtgtccggttgacggccctctcgccgattttcgggcgcacctccgaagaa
ctggacaaggacggcgacaacgtcgttgcagaacttgcaggtcaactgcgctcctattcc
gggctgttcgcacgcgtcgggtttgcggctgtgttcgaaagaatctctgccgaaacaaat
ctggagaagcgtgtactcgcggccccgtccggcgaacgagatttcaccgatttgcggcac
gtcgcacaactcctcggtcgcgtcgccaccgaggaagcgttcgggttgagcgcactggtt
cgctggctttccgaccgaatcaaggatccgacgtccgggagcgcgaccgacagaagccgt
cgcctcgacagtgacgctgccgcagtgcaaatcgctacggtgcatgccaccaaagggctc
gagttcccgatcgtctacgtcccgttcagttgggagagcgttggcggcttcaactcgccg
acgcagctgttgcacgacccggagggacgccgcatcctcgacgtcggcgggcaggaaggc
ccggggtacaacgccagaaagactgttgcggaggccgaagaagcgggcgaagaactgcgg
ttgctgtacgtggcgctgacccgggcgcagtgccaactcgtgctctggtgggcacccagc
tacgggacctcccgctcgccgctgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacggctcgcaacc
tggccggcagcagcttccgacgtgatctcggtggaacctgttggtccccatccgccctcg
cccgtccactggtccagagcggctgcggacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctgtggcgtcgtacgtcgtactcggcactcaccgccggagcgcac
cacgcggtcacgaccacgggcagcgaggtcgaggatcccgaaaaagacgacgagccagag
gattccgtagacctcgggagcattaccccctcgcccctggaggcgttcccttcacccatg
aacggacttcccgcgggcgccgcattcggcacgctggtgcatgaggtgctcgaggtggtg
gacacggctgtggcagatctgagagcggaactcgggatgcgttgcgccgaggcggtctcg
gtacgggcggccgaggtcgactccgaagcactcgcggatgcgctgtatctggtgatgcag
actcccttgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccactggccggtggcgacgatccggtgtcgatgagtgtcacactccgc
ggagtatcggaactgttgaggcgccacctttcctccgacgacattctggcgtcgtacgcc
gactatctggaccgtgtcgagacgtcaccgatgcgcggattcctgacgggcagtatcgac
gcagtcttgcggatcccgggcccgtcgttcgtgatcgtcgattacaagaccaaccggatc
ggtcgcggcgatctgacggctgccaactacacgcgtgaactcatggcgacggagatgatg
cgctcgcactatccgctgcaggcactgctgtattcggttgcactgcatcggtatctgcgg
tggcgcctgcccgactacgatccgcaccgtcatctcgggggcgcgcagtatcaattcgtg
cgtgggatgctcggcccggacagcccgccggaatgcggtgtcttcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga
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