Rhodococcus sp. NJ-530: EHW12_18660
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Entry
EHW12_18660 CDS
T11349
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhon Rhodococcus sp. NJ-530
Pathway
rhon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHW12_18660
Enzymes [BR:
rhon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EHW12_18660
Messenger RNA biogenesis [BR:
rhon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHW12_18660
Ribosome biogenesis [BR:
rhon03009
]
Prokaryotic type
rRNA processing factors
EHW12_18660
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AZI62961
LinkDB
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Position
complement(3992114..3995359)
Genome browser
AA seq
1081 aa
AA seq
DB search
MADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLHRDVA
QRIHASLASAAEAIEPVVAELDTLIDPVVEAPVVEEPAAEAPVEAPVAEAPAAKPVRARR
TRKKVVVEEPAAEEAVDPAVAEISAGLDAAAALQSKEAEQSDLFTSFEAPQTHQPEVAPA
APQVPLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTAEAETVVPEAAPVAVPAVEE
PAVTAPQTEGESAESEDEDDDQPRRRRRGRRGRGRGRGEQGGEQGSDEESDTATESEQES
APAAVEKQTDDAAGEESGDKSESTADADSENADDSDLDADGSSRRRRRRRRRKTGTDGAT
DATATSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPIL
TESEFLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLVEHFVTNSASASMVGNVYL
GRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSK
DPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPADAGVII
RTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFN
EDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRK
VWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGG
MIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFS
TTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSDSGTSRKNKRGRGDKSASTESNGQE
APAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSTESDSAGVSSGDDASKSADRQQ
DRPIDTPAAAEHHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRAASAPVAE
AAPEVGTVFVIPTPEPVVDAVAENVPAPATEVPAEEEVVVVKRPRRRRAAARPAGPPVDG
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaatccccaaccgaatcagattccagcaccaccccggaatttcccgacaag
atgcgcgtacacgcgctggcgaagttgctcggcgtcaccagcaagcaggtccttgccgaa
gccgcagcgctcggtaccgaattgcgcagcgcgcagtcgagtctccaccgtgacgtcgct
cagcggattcatgcctcgttggcttccgcggccgaggccatcgagcccgtcgtcgccgag
ctcgacaccctcatcgacccggttgtcgaggcgcctgttgtcgaggagcctgctgcagaa
gctcccgtggaggctcctgttgcagaggctccggccgcgaagcctgtcagggctcgtcgc
acccgcaaaaaggtcgtcgtcgaagaacctgcagcagaagaagcagtggatccggctgtc
gccgagatcagcgctggactcgacgccgctgctgcgctgcagagcaaggaagccgagcag
tccgatctgttcacttccttcgaggcgccgcagacccatcagcccgaggtggctcccgcc
gcgccgcaggtcccgctgttcctgcagccggatctcgaagccgccgaggtagctccgcgt
cgccgtcgcgcacgccgcgagcctgctgcaccggcggtcgtcgaagagaagcagacaacc
gcggaagccgaaaccgtcgttcccgaggcagcgccggttgcagttcctgccgtcgaagag
ccggctgtgaccgcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggacgac
gatcagccgcgtcgccgtcgtcgtggacgccgtggacgtggacgtggtcgcggtgaacag
ggtggtgagcagggttcggacgaagagtcggataccgctaccgaatcggagcaggaatct
gcccctgcggcagtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgataag
tccgagtccaccgctgatgcggattccgagaatgccgacgattccgatctcgatgccgac
ggatcgagccgccgtcgccgccgtcgtcgtcgtcgcaagaccggcaccgacggcgccacc
gacgcgactgcgacgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgaacct
cgcaacaagacccgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctggaa
gcgaagcgccagcgtcgccgcgacggtcgtgacgccggccgacgtcgcccaccgatcctg
accgagtcggagttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggtcgtgcgcgat
cgggcagacagcggtcagccgcatgcgactacacaggtagcagtcctcgaagacggagtg
ctggtcgagcacttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtacctc
ggacgtgtccagaacgtgctccccagcatggaagctgcgttcatcgacatcgggcgtggc
cgcaacggtgttctctacgccggtgaggtgaactgggaggccgccggtctcggtggcaac
tcgcgcaagatcgagcaggccctcaagccgggcgatcaggtgctcgttcaggtcagcaag
gatccggtcggtcacaagggtgctcgactgaccacacagatttcgcttgccggtcgtttc
ctcgtctacgtgcccggtggtacgtccacgggtatcagccgcaagcttccggacaccgag
cgcaagcgtctcaaggaaatcttgcgcgacatcgtgcccgccgacgcgggcgtgatcatt
cgcacggcgtccgagggcgtcagcgaagaagagttggcgcgcgacgtgactcgtctgcag
gctcagtgggccggcatcgaggagcaggctgcggctgcggacaccggtaagtccggcaac
ccgcaggcgctgtacgaagagcctgacatgctggtcaaggtcattcgtgatctgttcaac
gaggacttctccaagctggtcatcgagggcgagaaggcgcacacgacggtcgagaactac
atcaactccgttgcgcccgacctgcttccgcggctcgagaagtacacgccgaacaacggt
atcgacgtcttcgcggctcgccgtatcgacgagcagttggccaaggcactcgatcgcaag
gtgtggctgccgtccggcggcaccctggtgatcgaccgcaccgaggccatgaccgtcgtc
gacgtcaacaccggcaagttcaccggagccggcggaaacctcgaagagaccgtcacccgt
aacaacctcgaagcggccgaggagatcgttcgccagatgcgcctgcgggacatcggcgga
atgatcgtcgtcgacttcatcgacatggttctcgaatcgaaccgggacctggtcctgcgt
cggctcaccgaatgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacgtca
ctcgggctcgtgcagatgacgcgcaagaagttgggcaccggattggtcgaggccttctcg
accacctgtgagcactgccacggccgcggcatcatcgtccattccgagcccgtcgaggtg
aagtcctcggacgacggaggatcgcgttcgggctcgcagcgcagtgattccggtacctcg
cgcaagaacaagcgtggccgcggagacaagtcggcttcgaccgagtccaacggacaggaa
gctccggcgccggaggttccggccgtcgacgcgacggtcaagcgggctcatccggtggca
ttggcgatggcctcgcatcaccacgacgacgacgagaccgtcgcggccgactcgaccgag
tctgattccgccggtgtgtcttcgggggacgatgcatccaaaagtgccgatcggcaacaa
gatcggccgatcgatactcctgctgctgctgagcaccatgacgttcctgttgtggactct
gctgcggaagaagtatccgcagtggacaacgagtcggccgcagcttcgaccgaagcagct
ccgcgcggtcgtcggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgccgag
gcagctcccgaggtgggcacggtcttcgtgattccgactccggaacccgtggtggacgcg
gtcgcggaaaacgttccggctccggccaccgaagttccggctgaggaagaagttgtcgtc
gtcaagagaccccgtcgcaggcgtgcagcagcacgtcccgcagggcctccggtagacgga
gagtaa
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