Rhodococcus sp. NJ-530: EHW12_19395
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Entry
EHW12_19395 CDS
T11349
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhon Rhodococcus sp. NJ-530
Pathway
rhon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHW12_19395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhon03021
]
EHW12_19395
03019 Messenger RNA biogenesis [BR:
rhon03019
]
EHW12_19395
Transcription machinery [BR:
rhon03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EHW12_19395
Messenger RNA biogenesis [BR:
rhon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EHW12_19395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AZI63087
LinkDB
All DBs
Position
complement(4166132..4168261)
Genome browser
AA seq
709 aa
AA seq
DB search
MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG
ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA
AETAPAAESAPAEAAPARTESAEDSDQSAPRRGRQRRGAARRAGSPDQGELSIEQEAPSA
KSDADTAKAADSSKVAETAKAEAPAERPARTEGKSDADQAPAEQGNERPRRERNRDNQGQ
RDNQGQRENQGNRGNQDRQDRQDRGNQNNAGQNNAGPRTDNRNNGPDDDEEGGRGRRGRR
FRERRGRGRDRGEGGAPNDSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVY
VSMNLIRKNGLRRGDAITGAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFN
KLTPLYPNQRLRLETEQHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVAT
NNPECYLMVILVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMG
KDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIA
TAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEA
AVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGAIDD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccacttctgcacccgccgggtcggaatcaggcgacaat
tctcaggcgtcatcttcagcatcgaacggtgcggtggcgacctccacgaagcgtgccgaa
acgcgccgtggtgccggactctccggcatggtgctcaccgaactccgcactcttgcgggt
gaactgggcatcaaaggcacttccggcatgcgcaagggtgacctgatcgcagccatcaaa
gagcgccagggcggcagcgcaaaggctgcacccgcacagagtgaactcactctcgacgac
gcacccgttgcgcgcactcgtgccaagagcactcgcgccgcacgcaccgaaacccccgca
gccgaaacagctccggcagccgaatcggctcctgccgaggccgcgcctgcgcgtaccgaa
tccgccgaggattccgatcagagcgcaccccgtcgcggacgtcagcgtcgtggcgccgct
cgtcgtgcaggttcacccgaccagggcgaactgagcatcgagcaggaagctccttcggcg
aagtccgacgcggacaccgcgaaggccgccgattcttcgaaggtcgccgagaccgccaag
gccgaggctccggccgagcgtcctgcgcgcaccgagggcaagtccgacgctgatcaggct
cctgccgagcagggcaacgagcgtccccgccgcgagcgaaaccgggacaaccagggccag
cgggacaaccagggccagcgcgagaaccagggcaaccggggtaaccaggatcgccaggac
cgtcaggatcgcggcaatcagaacaacgccggccagaacaacgccggtcctcgcacggac
aaccgcaacaacgggccggacgacgacgaagagggtggacgcggacgccgcggacgccgt
ttccgcgagcgccgtggccgtggtcgcgatcgcggtgagggtggcgcacccaacgattca
cgcgagaccgagattcgtgaggacgacgtcctgcagccggtcgccggcatcctcgacgtc
ctcgacaattacgccttcgtgcgtacgtccgggtacctcgccggccccaacgacgtctac
gtctccatgaacctgatccgcaagaacggccttcgccgtggcgacgccatcaccggtgcc
gtccgcgtctcgcgtgacggtgagcagggtagccagcgtcagaagttcaacccgctggtc
cgtatcgacacggtcaacggcggcgacgtcgaggccgcgaagaagcgccccgagttcaac
aagctcacgccgctgtacccgaaccagcgtctgcgcctcgagaccgagcagcacattctc
accacgcgtgtcatcgacctggtgatgcccatcggtaagggccagcgcgccctcatcgtg
agcccgcccaaggccggtaagaccagcgtgttgcaggcgatcgcgaatgccgtcgccacc
aacaatcctgagtgctacctgatggtcatcctcgtggacgagcgtcccgaggaagtgacc
gacatgcagcgcagcgtgaagggtgaggtcatttcctccaccttcgaccgcccgccggga
gatcacaccgcagttgccgagctggcaatcgagcgtgcgaagcgcctggtcgagatgggt
aaggacgtcgtcgtactgctcgactccatcacgcgtctgggtcgtgcgtacaacaactcc
tcgccggcgtcgggacgcatcctctccggtggtgtcgactcgacggcgctctacccgccg
aagcgtttcctcggtgctgcccgcaacatcgagaacggtggatcgctcaccatcatcgct
accgcaatggtcgagaccggatccaccggcgacaccgtgatcttcgaagagttcaagggc
accggcaacgccgagctcaagctcgatcgcaagatcgccgaacgccgcgtgttcccggcc
gtggacgtcaacccgtccagcacgcgtaaggacgagttgctcctgagcccggacgaagct
gcggtgctgcacaagctccgtcgcgtcctgtccggtctggactcgcatcaggccatcgat
ctgctgatcgatcgactgaagaagagcaagaacaacctcgagttcctgatgcaggtctcc
aagaccgcaccgggtgcgatcgacgactga
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integrated database retrieval system
