Rhodococcus sp. NJ-530: EHW12_20065
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Entry
EHW12_20065 CDS
T11349
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhon Rhodococcus sp. NJ-530
Pathway
rhon03030
DNA replication
rhon03430
Mismatch repair
rhon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHW12_20065
03430 Mismatch repair
EHW12_20065
03440 Homologous recombination
EHW12_20065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhon03032
]
EHW12_20065
03400 DNA repair and recombination proteins [BR:
rhon03400
]
EHW12_20065
Enzymes [BR:
rhon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EHW12_20065
DNA replication proteins [BR:
rhon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EHW12_20065
DNA repair and recombination proteins [BR:
rhon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EHW12_20065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TerD
RNase_T
BRCT
PTCB-BRCT
Rv2179c-like
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AZI63194
LinkDB
All DBs
Position
complement(4323485..4325401)
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AA seq
638 aa
AA seq
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MTSALSHAETLRLPADHRWVVLDVETSGMRSASHRVLSIAALVLREDGSVERQFSTLLNP
GCDPGPVHVHNLTPDRLAGAPRFEDIAEEFADLLSSRTMVAHNASFDYGFLDAEFQRAGF
GTPIEKRLCTLALSRRLELDVPNHRLATLAEYWKIEQVNAHDAYDDARVLVEVFGRSASL
AETLQLPLPVVGCKDRRATVHSREIKRVPSSFTNPGRLDLTHGLVQGMKIAISGPTSAPR
ATLAARLTDAGFEFTNTVSRQTSVLVCDNTASQSSKVRKAESDGIPVISEQQLEHLLERA
VPGEIKIEGASVGVSTVEPVPDTMTAPEVEVQREVVLVPEMIVSAQPRPDESTSGVRPSS
IATASPLANRKAKAWQGRRVLILGGTHLDGVIMRSRILQLGARPSLNFTTAVTEVLVLEG
GESDKRMARVTDRGLPKITESDVNEALVSGVVPAHMRLESRLSAPILMRGEVVDLPAAQS
SWSINVAWRAENVGDEFDVDVVAFLLDGTNKVDSDQDFVFYNNTVDEDGAVELSVDGDSE
QSVRADLDSLPAECQRVVIAAAVDGDKTFGDLGAVSVSIDGPDGTFATFVLDLGTVERTM
VLAEIYRRGNVWRLRAVGQGHNHGLGAMAVGYGVEVDD
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactagtgcgttgagccacgccgagacgcttcgtctgcctgcggatcaccgctgggtt
gttctcgacgttgagacgtcggggatgcggtcggcatcgcatcgtgtgctcagtatcgcc
gcattagtactgcgtgaggatggttccgtagagcgtcagttctcgactctgctcaatcca
ggatgcgatccggggcccgtccacgttcacaacctcactcccgaccgcttggctggtgcg
ccgcgtttcgaagacattgctgaggaattcgccgacttgctctcaagccggaccatggtg
gcacacaacgcgtcgttcgactacggcttcctcgacgcagagtttcaacgcgcaggtttt
ggcaccccgatcgagaagcggctgtgtactttggcgctctcgcgacgcctggagctcgac
gtacccaatcacaggctcgcaacactggccgagtattggaagatagaacaggtcaatgcg
cacgacgcctacgacgatgcgcgggtactcgtcgaggtcttcggcaggagcgcatctctc
gcggaaacgctgcaacttccgcttccagtggtggggtgtaaggaccgccgggccacggtc
cactctcgcgagatcaagcgagtgccgtcgtcattcaccaaccccggacgcctcgatctg
actcacggcttggtccaaggaatgaagatagcgatcagtggtccgacatccgcaccccgg
gctacgctggctgcccgcctcacggacgcgggattcgagttcacaaataccgtgagccga
cagacgagtgttctggtgtgtgacaacactgcatctcaaagctcgaaagtacgtaaggcc
gagtcggatggaattcccgtgatctcggagcagcagttggagcacttgttggaacgtgca
gtgccgggtgagatcaagattgagggcgcttccgtgggagtgagcactgttgaacccgtg
cctgacacgatgacagcgccggaagtcgaggtccagcgcgaggtggttctggtgccggag
atgatcgtatctgcgcaacctcgtcccgacgaatcgacctccggggtacggccatcatcg
atcgcgactgcatccccgctcgcgaatcgcaaggcgaaggcgtggcaggggcgtcgcgtt
ctgattctcggcggtacccatctcgacggcgtgatcatgcggtcgcgcatcctgcagctc
ggtgctcgtccgtctctcaacttcacaaccgccgtcaccgaggttttggtgttggaaggc
ggtgaatccgacaagcggatggcgagggtcacggatcgagggcttcctaagatcacggaa
tccgacgtcaacgaggcgttggtctcgggtgtagttcccgcccacatgaggctcgaatca
cgcttgtctgcaccgattttgatgcgtggcgaggtcgtcgatcttcctgccgctcagtcg
tcgtggtcgatcaatgttgcgtggcgggcagaaaacgttggagacgaattcgacgtcgat
gtggttgcctttctcctggacggaaccaacaaggtcgattcggatcaagatttcgtcttc
tacaacaacaccgtggatgaggacggcgcagtcgagctctccgtcgacggtgacagtgag
cagagtgtccgtgcagatctcgactctttgcctgcggaatgtcaacgtgttgtcatcgca
gcagcagtcgacggtgacaagacgttcggcgacttaggagcagtctcggtcagcattgat
ggtcctgacggaacatttgccacatttgtactcgatctcggaacggtcgagcggaccatg
gttctcgccgagatctaccgccgcggaaatgtttggcggcttcgggcggtaggtcagggg
cataaccacggactcggtgctatggctgtcggctacggtgtcgaagtggatgattga
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