Rhodococcus sp. DN22: RA302_04135
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Entry
RA302_04135 CDS
T09949
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhoo
Rhodococcus sp. DN22
Pathway
rhoo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RA302_04135 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoo03400
]
RA302_04135 (recD)
Enzymes [BR:
rhoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RA302_04135 (recD)
DNA repair and recombination proteins [BR:
rhoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RA302_04135 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
UvrD-helicase
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
AAA_24
TraI_hel_assoc_N
T2SSE
UvrD_C
AAA_16
SLFN-g3_helicase
AAA_28
Motif
Other DBs
NCBI-ProteinID:
WVX71430
LinkDB
All DBs
Position
902807..904675
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AA seq
622 aa
AA seq
DB search
MTEAQLAQRAQGIVRIFNEAGVLVAADVHVATRVCSLGGETSEEVMLAAALAVRAVRSGS
VCLDLRRMRDVSVDNATEDELTSLPWPEPSEIVAALRLSPLVIGGNAGPLRPLRLVDTDD
GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRTRLDSLFVDENGPTTSPDRQRIAA
ALATTQWTTVIAGGPGTGKTHTVARILALLSEELGLNARIGLAAPTGKAAARLQESVREQ
TASLGLPEELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVSLTLMARLLE
AVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVEVSRNPALTQLVGDDLTATGSEEALS
ADEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSAEVLRILRSGDPAVSFHSPEDVDA
LRADIVASSEVVTRSAEEGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQAMEWVGTASG
QFLDPTRWYPGQPLLVTANDYEAKIYNGDAGVIVQREDGVPIAAFQRGSDAFLIHPSQLS
SVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHVRVIGTEDSVRA
GVQRQVLRASGLRREIRPYDGP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcgcaattggcgcagcgcgcccaagggatcgtgcgaatcttcaatgaagcc
ggggttctggttgccgccgacgttcatgtcgcgacgagagtgtgcagcctgggcggtgaa
acttccgaagaagtgatgctggccgcggcgttggcagttcgggccgtgcgatcaggttcg
gtgtgcctcgatctacgacggatgcgcgatgtgagcgtcgacaatgcgacggaagacgaa
ctcacgtcgttgccgtggcccgaaccgtcggagatcgttgccgcccttcggctgagccct
ctggtgatcggcggcaacgccggaccgctcaggccactccggttggtcgacacggacgac
ggtgagcttctctacctcgatcggtactttctgcaggagcagacgattcggcgagtgctc
gacgagcgtgcgtccacgtggccacccgccgacctgaaagcggtccgaacgcgcctggat
tcgctgttcgtagacgagaacgggccgaccaccagccctgatcgtcaacggatagccgct
gctctcgccacgacacagtggacgacggtcatcgccggtgggcccggaaccggcaaaacc
catacggtcgcacgtattctcgctctcctgtcggaggagctgggtttgaatgctcgcatc
gggttggccgcaccgacgggcaaggccgcagcacgtctgcaagagtccgtacgtgagcag
accgcgagccttggccttcccgaggaactcgcggccatgaccttgcaccggctactcggt
tggcagcgggggagttcgagtcgtttcaaatacaatgcgaccaacagacttccctacgat
gtggtcgtcgtcgacgagacgtcgatggtctccctcaccttgatggcgcgcctgctcgag
gccgttcgccccgatgcccggctactgctcgtcggcgatcccgatcagttgacctccgtc
gacgccggcgctgttcttgctgaccttgtcgcccgcccggtagaagtcagtagaaatccg
gcgctgacacagttggtgggtgacgatctcacggccaccggttccgaagaggcgctgagt
gcggatgagcaggatcgtctgcggggcgggatcattcaactctcacgcgggcgccgcttc
gacggaaccatcgcgtcgttggccagggcagttcgagcgggagattccgctgaggttctg
cgcatcctgcgtagtggcgatcccgcagtctccttccattctcccgaggacgttgacgca
ttgcgcgccgatatcgttgcgagttcagaggtggtgacgaggtcggccgaggagggtgat
gcgatcggcgccctgaaaggcctggaatcgcaccgccttctgtgcgcgcaccgtgacgga
ccgtacggtgtcgggcggtgggcgcagcaggcgatggagtgggtcggcacggcatcaggg
caattcctggatccgacgaggtggtatccgggccaacccctgttggtgacggccaacgac
tacgaggccaagatctacaacggggatgccggggtgatcgtgcagcgtgaggatggcgtt
cctattgccgcattccagcgggggagtgatgcgtttctgattcacccgagccaactctcg
tcggtgcagaccgtttacgcgatgacgattcaccggagccagggcagccagtacgacacg
gtatcggtgatgctgccggccgaagcgtcgtcactactgacccgggagttgctgtacacg
gcgatcactcgcgccagaaaccatgtgagggtaatcggcacggaggattccgtgagggcg
ggagttcagcgacaggtgctcagggcaagtgggctgcgtcgggagatccgtccgtacgac
gggccgtaa
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