Rhodococcus sp. DN22: RA302_13005
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Entry
RA302_13005 CDS
T09949
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhoo
Rhodococcus sp. DN22
Pathway
rhoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA302_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoo03019
]
RA302_13005
Messenger RNA biogenesis [BR:
rhoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA302_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WVX73079
LinkDB
All DBs
Position
2827449..2829458
Genome browser
AA seq
669 aa
AA seq
DB search
MTRPPRRRSASRQAGPPSPPAPETAAKAAPVEAPAAPAAEAAPAAAAPPKKAAAAKSAAT
KSAATKSAAPKKSTEDRSPRKSAGGNRPAASKAGNGRGNKRPENRPAVDPTGRLGTPPKA
PASGLRIVALGGIGEIGRNMTVFEHRGKLLIVDCGVLFPEDQQPGVDLILPDFRYIEDRM
DDVEAVILTHGHEDHIGALPFLLRLRADIPVIGAKFTLALVAAKCREHRLRPNLVEVVEG
NTTTHGPFDCEYFAVNHSIPDALAIAIRTDAGVVLHTGDIKLDQLPLDGRLTDLAGFSRL
GDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDNVIGKAKQRVIVASFASHVHRIQQVVDV
AARYNRRIVFVGRSMVRNMQIAQDLGYLTVPDGLVVDIDTAATLPDDRLVLISTGSQGEP
LAALSRMARGEHRQINIRANDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQSAKVH
VSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAKATGVPEERIVLAEDGVVVDM
VDGLAEIVGRVPVGHVYVDGLSVGDVGEPTLSDRLVLGEGGFIAITIVINESTGRAVSTP
EVSGRGFSDDPTALKAAADLVESDLARLASEGVIDAHRIAQSVRRVVGRWVADKYRRRPM
IIPTVIAVP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtcccccccgacgtcgtagtgccagtcgtcaagccggtccgccttcgcctccg
gctcccgaaacggccgcgaaggccgcaccggtagaggcaccagctgcgccggcggcagaa
gcggcccccgccgcggccgccccgcccaagaaggccgcagcagccaaatctgcagcgacc
aagtccgccgccaccaaatctgctgcacccaagaaatcgaccgaagacaggtcgccgcgc
aaatctgccggcggcaaccgtccggcagcgtcgaaggcgggcaacgggcgcggaaacaag
cgccccgagaaccgtccggccgtcgatcccacaggtcgcctcggaacacccccgaaggcg
ccggcatcaggtctgcgcatcgttgctctcggcggcatcggcgaaatcggtcgcaacatg
acggtgttcgagcaccgcggcaagttgctgatcgtcgactgcggtgtgctgttccccgag
gaccagcagcccggcgtcgacctgatcctcccggacttccgctacatcgaagaccgtatg
gacgacgtcgaagccgtcatcttgactcacggccacgaggaccacatcggtgctctgccg
ttcttgctgcgcttgcgcgcggacattccggtcatcggcgcgaagttcactctcgccctc
gttgccgccaagtgccgcgagcatcgcctgcgaccgaacctcgtcgaggtcgtcgaagga
aacaccaccactcacggcccgttcgactgcgagtacttcgccgtcaaccactcgattccc
gacgcgctcgcgatcgcgattcgcaccgacgccggagttgtactgcacaccggtgacatc
aagctcgatcagctgcctctcgacggccgcttgaccgacctcgccggtttctcccgcctg
ggcgacgagggtgtcgacctgttcctcgtggactcgaccaacgccgaggtcccgggattc
gtcacgcccgagcgtgaaatcgggggagtgctcgacaacgtcatcggcaaggcgaagcag
cgcgtcatcgtggcatcgttcgccagccacgtgcaccgcatccagcaggtcgtcgacgtt
gccgctcggtacaaccgtcgcatcgtcttcgtcggccgctcgatggtccgcaacatgcag
atcgcccaggatctcggctacctcacggtgccagacggactggtcgtcgacatcgacacc
gccgccacccttcccgacgatcgcctggtgctcatttcgacgggttcgcagggtgagccg
ttggcagcgctctcgcggatggcacgcggcgaacaccgccagatcaacatccgtgccaac
gacctggtcgttctcgcatcctcgctgattccgggtaacgagaactccgtttttgccgtg
gtcaacggcttggccaagcgcggtgccaccgtcgtgacgcagcagagcgccaaggttcac
gtctcgggccacgcgtccgccggtgagttgctctacctgtacaacgcggttcggcccacc
aacgccatgcccgtccacggtgaatggcggcacctgcgtgccaacgccgcccttgccaag
gccaccggcgttccggaagagcgcatcgtgctggccgaggacggcgtcgtggtcgacatg
gtcgacggcctcgccgagatcgtcggacgcgtaccggtcggacacgtctacgtcgacggt
ctttcagtcggtgacgtcggcgagccgacgctctccgatcgactcgtactcggtgaaggc
ggcttcatcgccatcaccatcgtcatcaacgagtcgacaggacgcgcagtcagcactccc
gaggtgtccggccgcggtttctccgacgatccgacggcactcaaggccgccgcggatctc
gtggaatcggacctggcccgattggcgagcgaaggcgtcatcgacgctcatcgcatcgcg
cagtccgtgcgccgcgtcgtcggacgctgggtcgcggacaagtaccgccgccgtccgatg
atcattccgacggtcatcgcggttccgtag
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