Rhodococcus sp. DN22: RA302_13165
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Entry
RA302_13165 CDS
T09949
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rhoo
Rhodococcus sp. DN22
Pathway
rhoo00300
Lysine biosynthesis
rhoo00470
D-Amino acid metabolism
rhoo01100
Metabolic pathways
rhoo01110
Biosynthesis of secondary metabolites
rhoo01120
Microbial metabolism in diverse environments
rhoo01230
Biosynthesis of amino acids
Module
rhoo_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhoo00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RA302_13165 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RA302_13165 (dapF)
Enzymes [BR:
rhoo01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RA302_13165 (dapF)
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Gene cluster
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Motif
Pfam:
DAP_epimerase
CusF_Ec
Motif
Other DBs
NCBI-ProteinID:
WVX73109
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Position
2857141..2858010
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AA seq
289 aa
AA seq
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MDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL
GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV
VVHGYDATHGDVTVAMGPIKDLGTSSATIDGRVFAGVGIDVGNPHLACVDEHVTAEVLSA
LDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCGTGTVAAAAAALKF
DGRDEGSVLVRVRGGEVQVTVEGGEGSLRGPSVLVANGTISDAWWQSLV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggatttcagtaagggccacggcacgcagaacgacttcgttgttctccctgacctcgac
gttcgggtcgatctcgagccggcgcgagtttcagcgttgtgtgatcgtcagcgtggcctc
ggcgccgacggcatccttcgtgtcgcccgggcaggcgcacttgcggacgcgggcgtgctc
ggtgcgctgcccgacggcgtcgctgccgaagactggttcatggactaccgcaacagcgac
ggctccatcgcggagatgtgcggaaacggagttcgcgtattcgcccactatctcaaggcc
tcgggcttggagagcaaggacgagttcgtggtcggcagtcgtgccggagcgcgtccggtc
gtggtgcacggctacgacgccacacatggtgacgtgaccgtggcgatgggcccgatcaag
gacctcggcaccagttcggcaacaatcgacggccgcgtcttcgccggcgtcggcatcgac
gtcggtaatccgcatttggcgtgtgtcgacgagcacgtgacggcagaagttttgagtgcg
ctcgatttgagtgtttctccgggcttcgatccggggttcttcccgcacggggtcaacatc
gagatcgtgacgccgatccacgacggtggggtccacatgcgcgtacacgagcgtggtgtg
ggcgagactcgttcctgcggaaccggaacggtcgcagctgcggccgcggcgctgaagttc
gacggccgagacgaaggctcggtgctggtgcgcgtgcgcggcggcgaagtgcaggtcacc
gtcgaaggcggcgaagggtcgttgcgggggccctcggttctggtggcgaacgggacgatc
agcgatgcctggtggcaatcgctcgtgtga
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