Rhodococcus sp. DN22: RA302_19855
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Entry
RA302_19855 CDS
T09949
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhoo
Rhodococcus sp. DN22
Pathway
rhoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA302_19855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoo03019
]
RA302_19855
03009 Ribosome biogenesis [BR:
rhoo03009
]
RA302_19855
Enzymes [BR:
rhoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RA302_19855
Messenger RNA biogenesis [BR:
rhoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA302_19855
Ribosome biogenesis [BR:
rhoo03009
]
Prokaryotic type
rRNA helicases
RA302_19855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
WVX68733
LinkDB
All DBs
Position
complement(4393482..4395257)
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AA seq
591 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTG
KTAAFAVPVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR
DTPGDKQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDA
LTRVLEVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH
LLKSIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHD
VPLIDIAAALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQE
LAAYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEAL
RRTRISGVLIQLQPDFGPPQGRPSGRGDRGGRDDRGGRDDRRGGGRDRYND
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagcgtgaccccgaacccccaacatttgccgacctcgacatcgatgat
cgggtactgaaggcactgtcagacgtgggctacgagtcgccctcgcccattcaggctgcc
accattccgccgctgctcgaaggcaaggacgtcgtcggtctcgcacagaccggtaccggc
aagaccgcagccttcgcagttccagtcctgtcgcggatcgacacgtcgatcaagcagacc
caggcgctggtgcttgctcccacgcgtgagctggcgcttcaggttgccgaggccttcggc
aagtactccgcgcacatccccggactcaacgtcctgccgatttacggtggccagagctac
ggcgtccagctgtccggactgcgccgcggtgcgcacgtcgtcgtcggtacgcctggtcgt
gtcatcgaccatctcgaaaagggcaccctggatctgaccaatctcaagtacctcgttctg
gacgaggccgacgagatgctcaagatgggcttccaggaggacgtcgagcgcatcctccgc
gacacccccggcgacaagcaggtcgctctgttctcggcaacgatgcccggctcgattcgc
cggatctcgaagcagtacctgaacaatccggtcgagatcaccgtcaagtccaagacgtcg
accgcctcgaacatcacgcagcgctacattcaggttgctcatcagcgcaagctcgatgca
ctgacccgcgtcctcgaggtcgaggctttcgaggcgatgatcatcttcgtccgtaccaag
caggccaccgaagacctggcggagaagctgcgggcccgcgggcactcggctgccgcgatc
aacggtgacatcgtccaggcacagcgtgagcggaccatcggtcagctcaagaacggcgcc
ctcgacatccttgtcgcgaccgacgttgccgctcgaggcctcgacgtggatcgaatctcc
cacgtcgtcaactacgacatcccgcatgacacggagtcgtacgtccaccgcatcggtcgt
accggccgcgccggtcgtcagggtgacgcgttgctgttcgtcgccccgcgtgagcgtcat
ctgctcaagtccatcgagaaggcgacccgtcagccgcttgcggagatgcagcttcccagt
gtcgacgacgtcaacgcccagcgcgtggccaagttcggtgactccatcaccgagagcctg
gcctcggagaatctcgcgatgttccgcaagatgatcgaggactacgaccaggaacacgac
gttccgctcatcgacatcgctgccgctctggcgttgcagtcgcgcgacggcgaagcattc
ttgctttctcccgagccgccggcaccgccgcgtcgtgagcgcgagcctcgtgaaccacgt
cctccccgtcgtttcgacgatggcccggccccgcgctcgcgtgggcccgagggccaggag
ctggccgcgtaccgcattgcagtcggcaagcgtcaccgcgtcgttccgggtgccatcgtc
ggtgccatcgccaacgagggtgggcttcgtcgaagcgacttcgggcacatcagcattcgc
ccggatcacagcatcgtcgagctgccggccgacctctccaacgagactctcgaagctttg
cgtcgcacacgtatctccggcgtcctgatccagctgcagcctgatttcgggccgccgcag
ggacgtccgagtggccgtggcgaccgtggtggccgggacgatcgtggtggacgtgacgac
cgccgcggtggcggacgcgatcgctacaacgactga
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