Rhodococcus sp. P1Y: D8W71_00565
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Entry
D8W71_00565 CDS
T09477
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhop
Rhodococcus sp. P1Y
Brite
KEGG Orthology (KO) [BR:
rhop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhop03032
]
D8W71_00565 (topA)
03400 DNA repair and recombination proteins [BR:
rhop03400
]
D8W71_00565 (topA)
Enzymes [BR:
rhop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D8W71_00565 (topA)
DNA replication proteins [BR:
rhop03032
]
Prokaryotic type
DNA Topoisomerases
D8W71_00565 (topA)
DNA repair and recombination proteins [BR:
rhop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D8W71_00565 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AYJ47071
UniProt:
A0A494SPY0
LinkDB
All DBs
Position
complement(118067..121084)
Genome browser
AA seq
1005 aa
AA seq
DB search
MATRKNGTGDTTTGGSVEPRRLVIVESPTKAKKIAPYLGKNYVVEASVGHIRDLPRGAAD
VPAKYKGEPWARLGVDVDHDFEALYVVSPEKKGKVAELKSLLKDADELFLATDPDREGEA
IAWHLLETLNPKIPVRRMVFHEITKPAILAAAADTRELDQDLVDAQETRRILDRLYGYEV
SPVLWKKVMPKLSAGRVQSVATRIIVQRERDRMAFRSAEYWDISATLDAGADASPRSFGA
RLVNVDGSRIAAGRDFGADGKLKSEGVTVIDEPRARRLAEALEGVDLTVASAEDKPYTRK
PYPPFMTSTLQQEAGRKLRFSSERTMRVAQRLYENGYITYMRTDSTTLSESAIAAARSQA
TELYGPEYVHPTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSALQTDEFRLYELIWQ
RTVASQMADLRGTTLTLRITGTAATGEDCTFSASGRTITFAGFLKAYVESVDDEAGGQSD
DAESRLPALKAGAAVVATKLDPDGHTTNPPARYTEASLIKTLEELGIGRPSTYASIIKTI
LDRGYVYKRGSALVPSWVAFSVIALLEAHFGRLVDFDFTAGMEDDLDAIAGGRERRGNWL
TNFYFGGDTGAEGSVARSGGLKKMVGTNLEDIDARVINSIRLFDDDQGREIHVRVGRYGP
YLERMVKNDDDPDGDPISQRANLPDDLPPDELTLEFAEKLFATPQAGRKLGADPLTGNEI
VAKEGRFGPYVTEILPEPEPEPTPPEPDIVPIPSDEGGGGTKTATKTAAKKAPAKKAAKK
ATGPKPRTGSLLKSMDLATITLEDALKLLSLPRVVGLDPESKDLITAQNGRYGPYLKKGT
DSRSLTDEEQLFTVTLEEALKIYAEPKRRGRQGEAKPPLRELGVDPISEAPMVIKDGRFG
PYVTDGETNASLRKDDDVATITDDRASELLADRRARGPVKKKATKKATKKATATKTATKK
APAKKAAAKTTAAKKTPAKKAPAKKAASKTAASKTAAAKKAPPAE
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacacgaaagaacggcacgggggacaccaccaccggcggatctgtcgagccacgc
cgccttgtcatcgtcgagtccccgacgaaagccaagaagattgccccctacctgggcaag
aactacgtcgtcgaggcatccgtagggcacattcgcgaccttccgcgtggcgctgccgat
gtgccggccaagtacaagggcgagccgtgggcgcgcctcggtgtcgacgtcgaccatgac
ttcgaagccctctatgtcgtatcgcccgagaagaagggcaaggtcgccgagctcaagagt
ttgctcaaggacgccgacgaactcttcctcgccaccgaccccgaccgcgagggcgaggcc
atcgcatggcacctcctcgagaccctgaaccccaaaatccctgttcgacggatggtcttc
cacgagatcaccaagccggccatcctcgccgctgccgccgacacccgtgagctcgaccag
gacctcgtcgacgcgcaggaaacccgccgcattctcgaccgcctctacgggtacgaggtc
agtccggtgctgtggaagaaggtcatgccgaagctgtcggctggccgcgtccaatccgtc
gccacccgaatcatcgtccagcgcgaacgcgaccggatggcgttccgtagcgcggagtac
tgggacatctccgccaccctcgatgcaggcgccgacgcgtcgccgcgcagtttcggtgct
cgtctggtcaacgtcgacggctcgcggatcgccgcaggtcgcgacttcggggccgacggc
aagctgaagtccgagggcgtcaccgtcatcgacgaaccgcgtgcccgacgcctcgccgag
gcgctggaaggcgtcgacctcaccgtcgcgtcggccgaggacaagccgtacacgcgtaag
ccctacccgccgttcatgacgtcgacgctgcagcaggaagcgggccgcaagttgcggttc
tcctccgaacgcaccatgcgtgttgcgcagcgcttgtacgagaacggctacatcacgtac
atgcgtaccgactcgaccacgctgtcggagtcggccatcgcggcagcgcgttcgcaggca
acggagctgtacggaccggagtacgtgcatccgactccgaggcaatacacgcgcaaggtg
aagaacgcgcaggaggcgcacgaggccatcaggcctgcaggtgacgtcttccaaaccccg
ggccagctgcattccgctcttcaaaccgacgagttccggttgtacgagctcatctggcag
cgcaccgtcgcgtcccagatggccgatctccgcggcacgacgctcacactgcgtatcacc
ggcaccgcggcgaccggggaagactgcacgttctccgcttcgggccgcaccattacgttc
gcgggcttcctcaaggcgtatgtcgagagcgtcgacgacgaggcaggcggccagtccgac
gatgccgagtcgcgtctacctgcgttgaaggcaggcgccgcggtggtggccaccaagctc
gatcccgacggccacacgaccaacccgccggcgcgctacaccgaggcttcgctcatcaag
accctcgaagagctgggtatcggccgcccgtcgacctacgcgtcgatcatcaagaccatt
ctcgatcgtggatacgtctacaaacgtggcagcgcgctcgtgccgtcgtgggttgcgttc
tcggtgatcgcgcttctcgaagcacacttcggaagactggtcgacttcgacttcaccgcg
ggcatggaagacgatctcgacgccatcgccggtggtcgcgagcgtcgtggcaactggctc
accaacttctacttcggcggcgacaccggcgccgaaggctcggtcgcccgatccggcggc
ttgaagaagatggtcgggaccaatctcgaggacatcgacgcgcgcgtcatcaactcgatc
agactgttcgacgacgaccagggccgcgagattcacgttcgcgtcggccgctacggcccg
tatctcgagcggatggtcaagaatgacgacgatcccgacggtgatccgatttcgcagcgc
gccaaccttcccgatgatctgccgccggacgagttgaccctcgaattcgccgagaagctg
ttcgcgacccctcaggcaggccgcaagctcggagccgatccgctgacgggcaacgaaatc
gtcgccaaggaagggcgtttcggtccgtatgtaaccgagattctgcccgagccggaaccg
gagccgacgccccccgagccggacatcgtgccgattccctcggacgaaggtggcggcggt
acgaagactgcgaccaagacggctgcgaagaaagcgccggccaagaaggctgcgaagaag
gccaccggccccaagccgcgcaccggttcgctgctcaagtcgatggacctggccaccatc
acgctcgaggatgcgcttaagctgctgtcgttgccgcgtgtggtcggactcgatccggag
tccaaggacctcatcaccgcgcagaacggtcgctacggcccatacctgaagaagggcact
gattctcgttcgctgacggacgaggaacaactcttcaccgtcacgctcgaagaggcgctc
aagatctacgccgaacccaagcgtcgcgggcgtcagggcgaggccaagccgccgctgcgc
gaactcggagtcgacccgatcagcgaagcgccgatggtgatcaaggacggccgcttcggt
ccctacgtcaccgacggcgagaccaacgccagcctgcgcaaggacgacgacgtcgccacc
atcaccgacgatcgtgcgtcggaactgttggcggaccggcgtgctcgcggtccggtgaaa
aagaaggccaccaagaaggcgacgaagaaggcaaccgccaccaagacggcgaccaagaaa
gctccggcgaagaaggccgcagcgaagacaactgctgcaaagaaaacgcccgccaagaag
gctccggcgaagaaggctgcatcgaagactgcggcttccaaaactgctgcggcgaagaag
gctccgccggccgagtag
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