Rhodococcus sp. P1Y: D8W71_19950
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Entry
D8W71_19950 CDS
T09477
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhop
Rhodococcus sp. P1Y
Pathway
rhop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8W71_19950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhop03019
]
D8W71_19950
03009 Ribosome biogenesis [BR:
rhop03009
]
D8W71_19950
Enzymes [BR:
rhop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D8W71_19950
Messenger RNA biogenesis [BR:
rhop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D8W71_19950
Ribosome biogenesis [BR:
rhop03009
]
Prokaryotic type
rRNA processing factors
D8W71_19950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYJ50183
UniProt:
A0A494T0J7
LinkDB
All DBs
Position
complement(4323834..4327676)
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AA seq
1280 aa
AA seq
DB search
MADQAPPEDVQTSNRESAAGDANASAGLTPTFPDRLRVHALAKIIGVTSKQVLAKLGELG
IEARSAQSSLGRDDAVTVHGAFTSPEAPAPVDASPDAVTEQPAVSAPATAPADTAAPEDT
ATLEGTATPEGTATPEGTATPEDTAAPGRPSTGSLFSTEEITVATATTPGSRPFAGPLFL
QPEAAAPEPRVRRRSKKAAGPAVDTDPSVSETESVTSEPEKRSGAAVSTDPAVKETPAAA
EVSTGSSDRVGTGSPIDTPGTEGASSSDDAAVSDDAAVSDDDGEGDDDQSQPRRRRRGRR
GRGRGRGDQPTDDNSDDSNSDGATDDGTSDEGTTDDATRGDGAGSEDSNLESGDSGKRDQ
DSSAGEPDAEDRTAEVDSAESESGDEDKPNTERRSRRRSRSRGGSKASSASEDESSASDA
GDSDAGESEDSSAESASESDDDQDESDGSSRRRRRRRRRRSSGDASSDSTSSDSASSEDD
PPNTVVHEREPRSKPRTKDEVQGITGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARR
ESVDRVMVVREKSFPDHGDTTQVAVLEDGVLVEHFVTSSASASMVGNVYLGRVQNVLPSM
EAAFIDIGRGRNGVLYAGEVNWDAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARL
TTQLSLAGRYLVYVPGGSSTGISRKLPDTERKRLKEILRDIVPAEAGVIIRTAAEGVSEE
ELARDVTRLQAQWATIEEASAQAESSKGSQPQTLYEEPDLLVKVIRDLFNEDFVRLVIEG
EKAWTTTSNYIETVAADMLPKLERHVSESGRPDVFEAYRIDEQLAKALDRKVWLPSGGTL
VIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEVVRQMRLRDIGGMIVVDFIDM
VLEQNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCQGR
GIIVHPFPVESKPDDGSRSGSSRGESTSPRKRRGRDKSETANNAQAQTDHTDATPDPSVK
RAHPVALAMAAHHDEVVDDVTPADVVDDGSETVIGASEVAAIQGKDSQEASGRSEDAEPA
TPIETIAPDTIPSDTTAPDAIAPDATPTRRGGRNARRKASRPAAQAVVDTDEVSTDPPVP
VVPDTAPTGTAPDDAAPDDASAETPNSAPEGETSVDTGEVAAELGAAESVASEPVVKARR
GRRVARKAAAPTAETPDAGAVFVIPATSDGGAATEESVQAPVTAPAFTQVNADAVVEEAP
VTKPRRRRAAARPAGPPVDA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagccccgccagaagatgtacagacgtcgaacagggaaagtgcagcaggt
gacgcgaatgcgtccgccgggctgactccgacgttccccgatcgcctccgcgtccacgcg
ctggccaagatcatcggtgtcacgagcaagcaggtactcgccaaactcggcgagctcggc
atcgaggctcggagcgctcagtccagtctcggtcgcgatgacgcggtcacagtgcacggt
gcattcacctcgcccgaggcgccggcacctgtcgacgcctcgcccgacgccgtcaccgaa
cagccagccgtgtcggcccctgccacggcaccagccgacacagcggcaccagaggacact
gcgacactagagggcactgcgacaccagagggcactgcgacaccagagggcacagcgaca
ccagaggacactgccgcgccgggtaggccgtcgacggggagtctgttctcgaccgaggaa
atcacggttgcaacggcgaccacgccgggttcccggcccttcgcgggccccctcttcctt
cagcccgaggcagccgctcccgaaccgcgggtgcgtcgccggagcaagaaggccgctggc
cccgcagtcgacaccgacccatcggtcagcgagaccgaatcggtgacatcggagccggag
aagcgttccggcgctgctgtcagtacggacccggccgtaaaagagacccccgcagctgcg
gaggtatcgaccggttccagcgatcgagtcggcaccggttcaccgatcgacaccccgggc
accgagggcgcatcgtcttcggacgacgcagcggtttcggacgacgcagcggtttcggac
gacgacggtgagggtgacgacgatcagtcgcagcctcgtcgtcgcaggcgcggtcgtcgt
gggcgtggtcgcggtcggggagaccagccgaccgacgacaactcggacgactccaattcc
gacggcgccactgatgacggcacctcggatgagggcaccactgatgacgccaccaggggc
gacggtgccggctccgaggactcgaacctcgaatcgggcgactcgggtaagcgagaccag
gactcgagcgccggcgaaccggacgcagaggaccggaccgccgaggtcgactccgcagag
tccgaatccggcgacgaagacaagccgaacaccgagcgtcgctcacgcaggcgtagcagg
tcgcgcggcggatccaaggcatcgagtgcaagcgaggacgagtcatcggcgtcggatgca
ggtgactccgacgcaggcgagtccgaggattcctcggccgagtcggcgagcgagagcgac
gacgatcaggacgagtcggacggttcgagtcgtcgccgtcgtcgtcgccgtcgtcgccgc
agttcgggcgatgcgtcgtccgattccacatcgtccgactccgcgtcgtccgaggatgat
ccgccgaacacagtcgtgcacgagcgcgagccacgcagcaagccgcgcaccaaggacgaa
gttcaaggaattaccggctcgacgcgtctggaggcgaagcgtcagcgtcgccgtgacggt
cgtgacgcaggtcgccgtcgtccaccgatcctgacggagtccgagttcctggctcggcgc
gaatcggtcgaccgcgtgatggtcgtacgcgaaaagtcgttccccgatcacggcgacacg
acacaggtcgcagtgctggaggacggggttctcgtcgagcacttcgtgaccagcagcgca
tctgcgtcgatggtcggcaatgtctacctcggtcgtgtgcagaacgtccttccgagcatg
gaagcggcgttcatcgacatcggccgcggccgtaacggcgtcctgtacgccggtgaggtc
aactgggacgcagctggactcgggggcaactcgcgcaagatcgagcaggcgctcaagccg
ggggaccaggtcctggtgcaggtcagcaaggaccccgtcggccacaagggcgcccgtctc
acgacacagctctcacttgccggccgctacctcgtctatgtgccgggtggcagctcgacc
ggcatcagccgcaaacttcccgacaccgagcgcaagcgactcaaggagatcttgcgcgat
atcgtgccggcggaggccggagtcatcatccgtacggccgccgaaggtgtcagcgaagaa
gaactcgcccgtgacgtgacccggttgcaggcgcagtgggcgaccatcgaagaagcgtcg
gcacaggccgagtcgagcaagggaagccagccgcagacgctgtacgaagagcccgatctg
ttggtcaaggtcattcgcgatctgttcaacgaggacttcgtcagactcgtgatcgagggt
gagaaagcctggaccaccacctccaactacatcgaaaccgtcgccgcggacatgttgccc
aagctggagaggcatgtgtccgagtcgggtcggcctgacgtcttcgaggcgtaccgaatc
gacgagcagctggccaaagcactcgatcgcaaggtctggttgccgtccggtggcacgctt
gtcatcgaccgcaccgaggccatgacggtcgtcgacgtcaacactggcaagttcaccggg
gcaggcggcaacctcgaggagaccgtcactcgcaacaacctggaagcggccgaagaggtt
gtccgtcagatgcggctgcgcgacatcggcgggatgatcgtcgtggacttcatcgacatg
gtcctcgagcagaaccgcgatctcgtcctgcgacgactgaccgaggcgctcgggcgtgac
cggacgcgtcaccaggtgtcggaggtgacgtcactcggactcgtccagatgacccggaag
aagctcggaaccggtctggtagaggcgttctcgacaacgtgcgagcactgccagggacgc
ggaatcatcgttcatccgttcccggtcgagagcaagcccgacgatggttcgaggtccggc
tcgtcccgtggcgaatccacttcgccgcgcaagcgccgaggccgtgacaagtccgagacc
gcgaacaacgcgcaggctcagaccgatcacaccgatgcgacacctgatccgtcggtgaag
cgagcgcatccggtcgcgctcgcgatggcggcgcatcacgacgaggtagtagacgacgtg
acgccggctgatgtcgtcgacgacggttccgaaacggtcatcggtgcatccgaggtagct
gcgatccaaggcaaggattcgcaagaagcgtccgggcgcagcgaagacgctgaacccgcg
acgccgatcgagaccattgctcctgacaccattccctccgacaccactgccccggacgct
attgccccggatgcgacgccgacccggcgcggtggcaggaatgcgcgccgaaaggcgtcg
aggcctgcggcgcaggctgtggtggacaccgacgaggtctcgaccgacccaccggtgccc
gttgtccccgacacggctcctaccggcacggctcccgacgacgcggctcccgacgacgcg
tccgctgagacacccaactcggcgccggaaggcgagacctctgtcgacacgggagaggtt
gccgccgagcttggtgctgcggagtcggttgcttccgagccggtcgtcaaggcacggcgt
gggcgccgagtggccaggaaggcagctgcgccgacagcggagacgcctgatgcaggagcc
gtcttcgtgattcccgctacgtccgatggcggcgcagcgacggaggagtccgtgcaagcg
ccggtcactgcgcctgcatttacccaggtgaacgctgatgccgtggtcgaggaagcgccg
gtgacgaagcctcgtcgacgtcgcgcagccgccaggcctgcaggcccgcccgtcgacgct
tag
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