Rhodococcus sp. P1Y: D8W71_22890
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Entry
D8W71_22890 CDS
T09477
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhop
Rhodococcus sp. P1Y
Pathway
rhop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8W71_22890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhop03021
]
D8W71_22890
03019 Messenger RNA biogenesis [BR:
rhop03019
]
D8W71_22890
Transcription machinery [BR:
rhop03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D8W71_22890
Messenger RNA biogenesis [BR:
rhop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D8W71_22890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AYJ50654
UniProt:
A0A494T5S4
LinkDB
All DBs
Position
complement(4973780..4976041)
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AA seq
753 aa
AA seq
DB search
MRATERTLGCADCERGKERTSVTDTELISAPEKTRRGAGLSGMVLTELRSLAGELGIKSI
SGMRKGDLIAAISARQGGGASATTDAPKAPRRSAADKSSAADKSSAVDKARAQEPATAPA
EATAPKTPVANPDADASTGDAAETPRRTRGRRAAGRRAGASDQLPLDEAAVEAAPETAPV
AESAGTDAGDNGSGAGERPRRSRAERDTRNSAEGNDSPRGNRGDSAGRSESSDGDSNRSD
GGRERNRDNNRGERTRDNRGESGRGEGNRADGNRGEGRSDRSEGNRGEGNRGDGNRGEGN
RNRNQSQNDNRGDDRNNNGPRDNRDNRDNGEDDGDGRGRRGRRFRERRRGRDRGDGGAGG
GGNEREPEIRDDDVLQPVAGILDVLDNYAFVRTSGYLAGQNDVYVSMNLVRKNGLRRGDA
ITGAVRVAREGEQSNQRQKFNPLVRLDTVNGGDVDAARKRPEFNKLTPLYPNQRLRLETT
QNILTTRIIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAISVNNPECYLMVVLVDERP
EEVTDMQRSVNGEVIASTFDRPPGDHTAVAELAIERAKRLVEAGQDVVVLLDSITRLGRA
YNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFE
EFKGTGNAELKLDRKIAERRVFPAVDINPSSTRHDELLLSPDEAAVVHKLRRVLSGLDSH
QAIDLLVDRLKKSKNNLEFLIQVSKTAPGALDD
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
attcgagctacggaacgaacccttggctgcgcagactgcgagcgagggaaggaaaggacc
tccgtgaccgatacggaactgatctctgcgcccgaaaagacccgtcgcggagctggcctg
tccggaatggtgctcaccgagctgcgtagtctcgcgggcgaactcggtatcaagagcatc
tccggtatgcgcaagggcgacctgatcgccgcaatctcagcacgtcaaggtggtggagcg
tcggcgacaaccgatgcacccaaagcccctcgacgcagcgcggcggacaaaagcagcgca
gcagacaagagcagtgcagtagacaaggcgcgagcccaggaaccggcgactgcgccggcc
gaggcaacagcgcccaagacacccgtcgcgaatcccgatgcggacgcgagcactggcgat
gcggccgagactccgcgtcgcacccgcggtcgtcgtgcagccggccgtcgagccggtgca
tcggaccagctgcctctcgacgaggcagcggtcgaggccgcacctgagactgctcccgtc
gccgaatccgcaggtacagacgccggtgacaatggttcgggtgcaggcgaacgcccccga
cgcagccgggcagagcgcgacacgcgaaactctgccgaaggcaacgacagtccgcggggc
aaccgcggcgactcggctggccgctccgaatcctccgacggtgactccaaccgttccgac
ggtggtcgcgagcgcaatcgagacaacaaccgcggtgagcgcacgcgcgacaaccgtggc
gagagcggccggggcgaaggtaatcgcgccgacggcaaccgtggtgaaggccgcagtgac
cggagtgaaggcaaccgcggtgaaggtaaccgtggcgatggcaaccgtggtgagggcaac
cggaaccgcaatcagagccagaacgacaatcgcggcgacgaccggaacaacaacggccct
cgcgacaacagggacaaccgtgacaacggcgaggacgacggcgatggccgcggacgtcgg
ggtcgtcggttccgtgagcgtcgtcgtgggcgcgaccgtggagacggcggcgcaggtggc
ggcggaaacgagcgcgagcccgagatccgcgacgacgatgtgttgcagccggtggcgggc
attctcgatgttctcgacaactacgcgttcgtccggacgtccggttacctggcgggccag
aacgacgtgtacgtctcgatgaacttggtccgtaagaacggacttcgtcgtggtgacgcc
atcacgggcgcagtgcgggttgctcgcgagggtgagcagtcgaaccagcgtcagaagttc
aacccgttggtccgtctggacactgtcaacggcggagacgtggacgctgcacgcaagcgt
cccgagttcaacaagctgacgccgctctaccccaaccagcggttgcgcctcgagaccacg
cagaacatcctcaccacacgcatcatcgacctggtgatgccgatcggtaagggacagcgc
gcgctgatcgtcagtccgccgaaggccggtaagacgagcgttctgcaggccatcgccaat
gcgatctctgtgaacaaccccgagtgctacctcatggtggttctggtcgacgagcgaccg
gaagaagtcaccgacatgcagcgttcggtgaacggcgaggtcattgcctcgacattcgat
cgtcctcccggcgatcacaccgctgtcgccgagctcgctatcgaacgcgcgaagcgcctc
gtcgaagctggtcaggacgtagtcgtcctgctcgactcgatcacccgcttgggccgtgcg
tacaacaacagctcacccgcgtcgggtcgaatcctgtccggtggtgtcgattcgacggcg
ctgtacccgccgaagcgcttcctcggtgctgctcgcaacatcgagaacggtgggtcgctg
accatcatcgccacggcgatggtcgagaccggctccaccggtgacaccgtgatcttcgag
gagttcaagggcaccggcaacgccgagctcaagctcgatcgcaagatcgccgagcgtcgc
gtgttccccgcggtggacatcaacccgtcgagcacccgtcacgacgagttgttgctcagc
cccgacgaggcagctgtggtgcacaagctccgccgcgtcttgtccggccttgactcgcat
caggcaatcgacctgcttgtcgatcgtttgaagaagagcaagaacaacctggagttcctg
atccaggtgtcgaagaccgcgcccggcgcgctcgacgactga
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