Rhodococcus sp. M8-33: QWW98_00805
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Entry
QWW98_00805 CDS
T10460
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhoq Rhodococcus sp. M8-33
Pathway
rhoq03018
RNA degradation
Brite
Enzymes [BR:
rhoq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QWW98_00805
Messenger RNA biogenesis [BR:
rhoq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWW98_00805
Ribosome biogenesis [BR:
rhoq03009
]
Prokaryotic type
rRNA processing factors
QWW98_00805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WVN76339
LinkDB
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Position
173535..176642
Genome browser
AA seq
1035 aa
AA seq
DB search
MAEQAPPNDNSNEEGTVVLPPKMRVHALAKLLGLTSKQVMAKAADLGTELRSAHSSLQRD
LAEQIRAALGAPAEAEPVPTAEAAPEPVGEAPEVPAGEAAVAVPAEVPVEEPAAAVQDTT
AQEPAAESVEAPAAPALFTGVEQETPVFAAPEPSTAEPVVSAPLFLQPEVTTPVEAPPRR
RRSRRAAEAPEPAVAEEVTEETAAVEEPAEETAEEEEPRRRRRGRRGRGRGRGEQPETQD
ETTAEEGTAAAEAEEAEAEEPTEAEEPTTEEAATAGPEAGEAEGGEAEQAEAEQAEAEEE
SAEGPSRRRRRRRRRKGSADGAETVAEDDSVPTVVHEREPRPKARAAKDEVQGITGSTRL
EAKRQRRRDGRDAGRRRPPILTESEFLARRESVDRVMVVREKTGDGAHPGNITQVAVLED
GVLVEHFVTSAGSGSMVGNIFLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLG
GNSRKIEQALKPGDRVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGSSTGISRKLPD
TERKRLKEILREIVPAEAGVIIRTAAEGVSEDELARDVQRLQTQWASIEEQAAKLESDGS
GQPKTLYEEPDLLVKVIRDLFNEDFSKLVIEGENAWTTVESYIRTVAPDMVPRVERHDPD
SGGRDVFAAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEET
VTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSE
VTSLGLVQMTRKRLGTGLVEAFSTTCEHCHGRGIVVHSEPVEAGAAEDGGRPARAESGSR
RRRGRDRGAQPEAATTETAAPAPVPEVATVDATVKRAHPVALAMAAHHGNHDENPAESGA
EQAQAAPAAPAQPAETREAQPAETREAEPAESRKAGPADTREARPAEAPEAEKQAAEPAA
RRRRRVSRAAAAPTGDGTGAGTVFVVPTPAPAPEPAAVAAAPVPDGENAEPVVVRRPRRR
RAAGRPAGPPVEAQA
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaacaagcgccgccgaacgacaattccaacgaagagggcaccgtggtgctgccg
ccgaagatgcgcgtgcacgcccttgccaaactgctcggcctgaccagcaaacaggtcatg
gccaaggccgccgacctcggcaccgagctgcgcagtgcccactcgagcctgcagcgcgac
ctcgccgaacagatccgcgccgcgctcggcgcaccggccgaggccgaaccggtgcccacc
gcggaagccgcaccggaaccggtgggtgaggcgcccgaggtgcccgccggagaggccgcc
gtcgcggtgcccgccgaggtccccgtggaggagccggcggccgcggtccaggacactacc
gctcaggaacccgccgcggagtccgtcgaggcacccgcggccccggccctgttcaccggc
gtggagcaggagaccccggtgttcgccgcgccggaaccgagcaccgccgagcccgtcgtc
agcgcaccgctgttcctgcagccggaggtcaccactcccgtcgaggccccgccccgtcga
cgccgttcccggcgagcggccgaggcacccgagcccgccgtcgccgaggaggtcaccgag
gagaccgccgcggtggaggaaccggccgaggagaccgccgaggaggaggagccgcgtcgg
cgccgtcgtggccgccgtggccgtggccgtggccgcggcgaacagcccgagacgcaggac
gagaccaccgccgaggaggggacagctgcggcggaggccgaggaagcggaggccgaggag
ccgacggaggccgaggagccgacgacggaggaagccgcgaccgccgggccggaggccggg
gaggccgaaggcggggaggccgagcaggccgaggccgagcaggccgaggccgaggaggag
tccgcggaaggtccctcgcgccgtcgtcgccgtcgtcgtcgccgcaagggcagcgcggac
ggcgccgagaccgtcgccgaggacgactcggtccccaccgtcgtccacgagcgcgagccg
cggcccaaggcccgcgccgccaaggacgaggtgcagggcatcaccggttccacccggctc
gaggccaagcgccagcgccgccgcgacggccgggacgcgggccgccgtcggcccccgatc
ctcaccgagtcggagttcctcgcccgtcgcgagtccgtcgaccgcgtcatggtggtgcgg
gagaagaccggtgacggtgcgcaccccgggaacatcacgcaggtcgcggtcctcgaggac
ggcgtcctggtcgagcacttcgtgaccagcgccggatccggttcgatggtcggcaacatc
ttcctcggccgtgtccagaacgtgcttccctcgatggaggcggcgttcatcgacatcggc
aggggccgcaacggcgtcctctacgccggcgaggtcaactgggaggccgccgggctcggc
ggcaactcccgcaagatcgagcaggccctcaagccgggtgaccgggtgctcgtgcaggtc
agcaaggacccggtcgggcacaagggcgcccgcctgaccacgcagatcagcctcgccggc
cgattcctggtgtacgtgccgggcggctcgtccaccggcatcagccgcaagctgcccgac
accgagcgcaagcggctcaaggagatcctgcgcgagatcgtcccggccgaggccggcgtg
atcatccgcaccgcggcggagggcgtgagcgaagacgagctcgcccgcgacgtgcagcgc
ctgcagacgcagtgggcttccatcgaggagcaggccgccaagctcgagtccgacggctcg
gggcagccgaagaccctctacgaagagcccgacctgctggtcaaggtgattcgcgacctg
ttcaacgaggacttctccaaactcgtcatcgagggcgagaacgcctggaccaccgtcgag
agctacatccgcaccgtcgcaccggacatggtgccccgcgtggagcggcacgatcccgac
tcgggtggacgcgacgtgttcgccgcccaccgcatcgacgagcagctcgccaaggcgctc
gaccgcaaggtgtggctgccgtccggtggcacgctcgtcatcgatcgcaccgaggcgatg
accgtcgtcgacgtcaacaccggcaagttcaccggggccggcggcaatctcgaagagacc
gtcacccgcaacaacctcgaggcggccgaggagatcgtgcggcagatgcggctgcgcgat
atcggcggcatgatcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgcgacctg
gtgctgcgacgcctcaccgaggcgctcggccgggaccgcacccgccaccaggtctccgag
gtgacctcgctggggctcgtgcagatgacgcgcaagcggctcggcacgggtctggtggag
gcgttctccaccacgtgcgagcactgccacggccgcggcatcgtcgtgcacagcgaaccc
gtcgaggccggcgcggccgaggacggtgggcggcccgcccgtgccgagagcggctcccgg
cgccgccggggccgcgaccgcggcgcccagccggaggcggcgacgaccgagacggccgcg
cccgcgccggtaccggaggtggcgacagtggacgcgaccgtcaagcgtgcccacccggtg
gccctggcgatggctgcgcaccacgggaaccacgacgagaacccggcggaatccggcgcc
gagcaggcgcaggcagcgccggccgcgccggcccagccggccgaaacacgcgaggcccag
ccggccgaaacacgcgaggctgagccggccgaatcacgcaaggctgggcccgccgacacg
cgcgaggcgcggccggccgaagcaccggaggccgaaaagcaggcagcggagccggcggcc
cgtcgccgtcgccgggtctcacgggccgccgcggccccgacgggcgacggcaccggcgct
ggcaccgtcttcgtggtgcccacaccggcccccgcaccggagcctgcggcggtggccgcc
gcgccggtcccggacggggagaacgccgagccggtggtcgttcgacggccgcgtcgtcgc
cgggccgcgggccggcccgccggcccgccggtcgaagcacaggcatga
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