Rhodococcus sp. M8-33: QWW98_24115
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Entry
QWW98_24115 CDS
T10460
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhoq Rhodococcus sp. M8-33
Pathway
rhoq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QWW98_24115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoq03400
]
QWW98_24115
Enzymes [BR:
rhoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QWW98_24115
DNA repair and recombination proteins [BR:
rhoq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QWW98_24115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WVN75447
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All DBs
Position
5279140..5281401
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AA seq
753 aa
AA seq
DB search
MTTRTFEGRRLNLTNLDKVLYPSTGTTKADVVDYYVAVAPVLLPHVAGRPGTRKRWPEGV
GGESFFEKNLASHAPKWLTRKTVHHKQRSVTYPVFDSVASLAWLGQQAALELHVPQWRFS
GSVPGPATRIVFDLDPGKGVTLAQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASTVAKQVAINLETLHPDLVTATMAKAVRGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLRQLRFDEVLARLEAGPDPLAALDPPLPESDALTEYRHKR
DPSRTPEPVPATVGSGPGNSFVIQEHHARRLHYDLRLERNGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGGMTIWDTGTYDTEKWRDDEVIVRLHGARVQGRY
ALIRTAGNQWLAHRMKDQSAPPGPPTSFPRDLEPMLATPGEVTDLDADEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRILDGHEVVLDGEVVACDTLGVTSFRQLR
TGGTPQYFVFDVLFLDGVTLYRKPYSDRRRVLDALAAAADGLVVPELLHGNGSEALEEST
RRGWEGVVAKRRNSVYVPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVQ
GEAGLEYVGRVGTGFDEPQLAELSAAMAGLRRRTTPFAGDVPREDARDAVWVSPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVVRGSG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctg
tacccgagcacgggcacgacgaaggccgacgtggtcgactactacgtcgccgtcgccccg
gtgctgctacctcacgtcgcgggccggcccggcacccgcaaacgctggcccgagggtgtc
ggcggcgagtcgttcttcgagaagaacctcgcctcccacgcgccgaagtggctcacccgc
aagactgttcaccacaagcagcggtcggtgacgtatccggtcttcgactccgtggcgtcg
ctggcctggctggggcagcaggcggcactcgagctgcacgtgccgcagtggcggttctcg
gggtccgtcccgggtcccgcgacgcggatcgtgttcgacctcgacccggggaagggggtc
acgctggcgcagtgcgccgaggttgcccgcctggtgcgcgacatggtcggcgggctcggc
tggcccgcctacccggtcaccagcggcagcaaggggatacacctgtatgtgccgctcgac
cgcgagctcgcgccgggcggggcgtcgacggtggcgaagcaggtggcgatcaacctcgag
acgctgcatcccgacctggtcaccgccaccatggccaaggccgtgcgcggtggccgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgcgccgtattccctgcgc
ggccgggagcagccgtgggtcgccgcgccccgcacctgggacgaactcgacgaccccggg
ttgcgccagttgcggttcgacgaggtgctcgcgcgcctcgaggccggacccgacccgctc
gccgcgctcgacccgccgctgcccgagtccgacgccctgaccgagtaccggcacaagcgc
gacccgtcccgcacccccgaacccgtccccgccaccgtgggatccggaccgggcaattcc
ttcgtcatccaggagcaccacgcccgccgcctgcactacgacctgaggctcgagcgcaac
ggggtgctcgcgtcgtgggcggtgccgaagaaccttccggacgatcccggccgcaacaac
ctcgcggtgcgcaccgaggaccatccgctcgagtacctcaccttccacggcgtgatcccc
aagggggagtacggcgccggcggcatgacgatctgggacaccggcacctacgacaccgag
aaatggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcagggccggtac
gcgctgatccgcacggccggcaaccagtggctcgcgcaccgcatgaaggaccagagcgcg
ccgccgggcccgccgacgagcttcccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccgatctcgacgccgacgaatgggcattcgagggcaagtgggacggctaccgc
gccgtcgccgagatcgagaacgggcagctgcggctgcattcgcgttccggccgcgacatc
accggcgactaccccgctctcgccgatctcacccgcatcctcgacgggcacgaggtggtc
ctcgacggcgaggtggtcgcgtgcgacaccctcggtgtcacaagcttccggcagctgcgg
accgggggcaccccgcagtacttcgtgttcgacgtcctcttcctcgacggggtgaccctg
taccgcaagccgtattccgaccggcggcgcgtgctcgacgcgctcgccgccgcggccgac
ggcctggtcgttccggaactgttgcacggcaacggatccgaagcgctggaggagagcacc
cggcggggctgggagggggtggtggccaagcggcggaactcggtgtacgtgccgggtcgg
cgcagccccgactgggtgaagtcgaagaactggctcacccaggacgtcgtcatcgggggc
tggcgcctcggcaagggggcccgcgccggcaccttcggctcgctgctggtcggcgtgcag
ggtgaggccgggctggagtacgtcggccgcgtcggcaccggcttcgacgaaccccagctc
gccgaactgtcggccgccatggcgggtctgcggcgccgcaccacccccttcgccggcgac
gtcccgcgcgaggacgcgcgggacgcggtgtgggtgagcccgaagctggtgggggaggtg
cggttccgggagtggaccgacgccggcaagctctggcatccgagctggcgcgggttgcgc
gacgacatcgatccgcaggacgtggtccgcggcagcggatga
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