Rhodococcus sp. M8-33: QWW98_25875
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Entry
QWW98_25875 CDS
T10460
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhoq Rhodococcus sp. M8-33
Pathway
rhoq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QWW98_25875 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoq03400
]
QWW98_25875 (recD)
Enzymes [BR:
rhoq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QWW98_25875 (recD)
DNA repair and recombination proteins [BR:
rhoq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QWW98_25875 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
AAA_22
SH3_13
TraI_hel_assoc_N
AAA_24
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
WVN75774
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Position
5629553..5631436
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AA seq
627 aa
AA seq
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MTKAQVAQRGKGALRVFNEAGVLAAADVHVALRLAQLSGETAEDVHLATALAVRAVRAGS
VCLDLTRLREVTVDEAAEVDLAALPWPDDDAVVAGLRRSPLVVGGDRGPLRPLRLVDTAD
GPLLYLERYFRQEETVRQILDARGLGHPVVDEQTLERGLRELFRDQHDPGRPAAAPDRQR
IAAALAATGWTTVIAGGPGTGKTHTVARILALLTTLHGPALRIGLAAPTGKAAARLQESV
REQAEPLGLRADLSAMTLHRMLGWQRGRTRYRYHAGNHLPYDVVVVDETSMVSLTMMCRL
LEAVRPGTRLILVGDPDQLTSVDAGAVLADLVARPVTAAGNPVLGRVVGPDLDAGDDPAE
AALSPGERNRLRGGVIRLSRGRRFGGDIAHLAVAVREGDADAVMRILGGGGTEVSFHAPN
DLEALRHDVVTTAATVTAAAVAGDAVTALEQFETHRLLCAHREGPYGVQWWARRAMEWIA
TDTGRRLDAERWYPGQPLLVTANDHETRIYNGDTGVVVVDAAGEPVAAFARGREPFRLHP
SQLSAVQTVYAMTIHRSQGSQYGTVSVILPPPESSLLTRELLYTAITRARGHVRLIGTEE
AARAGVERRVLRASGLRRQLPGPRAVR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaggcccaggtggcccagcgtggcaagggggccctgcgggtcttcaacgaggcc
ggggtgctcgcggccgccgacgtgcacgtcgcgctgcggctggcccagctgtccggggag
accgccgaggacgtgcacctcgcgaccgcgctggccgtgcgtgccgtgcgtgccggttcg
gtgtgcctggacctgacccggttgcgggaggtcaccgtcgacgaggccgcagaggtggat
ctcgcggcgctgccgtggccggacgacgacgccgtcgtcgccgggttgcgccgcagtccg
ctcgtcgtcggcggcgaccgcggcccgctgcgcccgctgcgcctggtggacaccgccgac
ggtccgctgctgtacctcgagcgctacttccgtcaggaggagacggtccggcagatcctc
gacgcccgcgggctcggtcatcccgtcgtcgacgagcagacgctcgagcgggggctgcgg
gagctgttccgggaccagcacgaccccggccgcccggccgccgcaccggatcggcagcgc
atcgccgcggcgctggccgccaccgggtggaccacggtcatcgccggcgggccgggcacc
ggcaagacccacaccgtcgcccggatcctggcgctcctgaccacgctgcacggccccgcc
ctgcgcatcggattggccgcgcccaccggcaaggccgcggcccggctgcaggaatccgtc
cgcgagcaggccgagccgctgggcctgcgcgccgacctgtccgcgatgaccctgcaccgc
atgctcggctggcagcgcggccgcacccggtatcgctaccacgccggcaaccatctgccc
tacgacgtcgtggtcgtcgacgagacgtcgatggtgtcgctgaccatgatgtgccggctg
ctcgaggccgtccgccccggcacccgcctgatcctggtgggcgaccccgaccagctgacc
tccgtcgacgccggcgccgtcctggccgacctcgtggcccgtcccgtcaccgccgcggga
aaccccgttctcggccgcgtcgtgggacccgacctcgacgccggcgacgaccccgccgag
gcggcgctctcgccgggggaacggaaccggctgcgcggcggcgtgatccggctcagccgc
ggccggcggttcggtggcgacatcgcacacctggccgtcgccgtgcgggagggcgacgcc
gacgcggtgatgcggattctcgggggcggtggcaccgaggtgtccttccacgcgccgaac
gacctggaggccctgcggcacgacgtcgtcaccaccgccgcgaccgtcaccgccgccgcc
gtcgcgggcgacgccgtgactgcgctcgagcagttcgagacgcaccgcctgctgtgcgcg
caccgcgagggaccgtacggggtgcagtggtgggcgcggcgggcgatggagtggatcgcc
accgacaccggccggcgactcgacgccgagcgctggtacccgggtcagccgctgctcgtc
accgccaacgaccacgagacccgcatctacaacggcgacaccggcgtcgtggtcgtcgac
gccgccggcgaacccgtcgcggcgttcgcgcgtggcagggagccgttccggctccacccg
agccagctgtcggccgtgcagaccgtgtacgcgatgaccatccaccgcagccagggcagc
cagtacggcacggtctcggtgatcctgcccccacccgaatcctcgctgctgacccgcgaa
ttgctgtacaccgcgatcacccgggcgcgcggtcacgtgcgcctgatcggcaccgaggaa
gccgcccgcgccggggtcgagcggcgggtgctgcgagccagcggcctgcgccggcagctg
ccgggccctcgggccgtccggtga
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