Rhodopseudomonas sp. P2A-2r: ONR75_16755
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Entry
ONR75_16755 CDS
T10299
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhor Rhodopseudomonas sp. P2A-2r
Pathway
rhor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ONR75_16755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhor03019
]
ONR75_16755
03009 Ribosome biogenesis [BR:
rhor03009
]
ONR75_16755
Enzymes [BR:
rhor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ONR75_16755
Messenger RNA biogenesis [BR:
rhor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ONR75_16755
Ribosome biogenesis [BR:
rhor03009
]
Prokaryotic type
rRNA processing factors
ONR75_16755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
UZE46722
LinkDB
All DBs
Position
complement(3467712..3470897)
Genome browser
AA seq
1061 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEETENRSNRKRPRHRNSRR
RGSSDRVQSDVVAGASLDPSQAEQPRDPAFVSHDGEHDHAHDAGHHVADGEHHDHDDHEH
SHAHDHVEGEQALGHAVGDHDHEAHAQVAPEAAVSEASAVETPSSEIHPDQPVSAGIAPD
AVAEPQPVVAVAHDDHAHDHAHDDHGHDEHHSDAHAAENAAYAEDVPHHDDHAGEHAAAS
EADDHDDDEEDGEEAEEDIVESVGGDDVMEEVPERAFRPRRQYKIQEVIKRRQVMLVQVV
KEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVSDLDVPEGM
GIILRTAGASRTKPEIKRDFEYLIRMWETVRDMTLKSQAPTLVYEEGSLIKRSLRDLYNK
EIDEIQVAGEAGYQEARDFMHMLMPSNVRAVKQYRDGQPLFSRMGVESQLDAMFSPTVQL
KSGGYIVLNQTEALVSIDVNSGRSTKEHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVI
DFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEVCP
HCGGSGHVRSVSSVALQLLRGLEEILMKGATHNLIVRTRTDVALYVLNHKRAHLRDLESS
FKVTLAVIADPTVAGQQSFVIDRGEQVHTLEAAKAVLAAQVAAFPVQVEEPYEDEESFET
EAEIETEETEGLTDDEGASESVAGETDADGRKRKRRRRRRGRSGEAREGGPAPREGGEFP
AASTNADGLEAVGDDSEGDEDESDEQPGEARADAPVDGERRPRRRGRRGGRRRRGGPEEG
LVGSISDELGPIPASEAIEAVADFDGVTPPQQPLEAPADSVTSPVEQQQSRHDAVPMFAP
SAPEPAPVAPVAEPAPAAPVVTAPEPVSQDDEKAAARRRSTVREKVSFASAEPQSAPTPV
AAAPQLAPAPAAASAPAAPEAAPSPQPRKAGWWSRAFGNGE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgccaaacaaaatgttgatcgatgctacccacccggaagagacccgggttgtcgtggtt
cgcggcaatcgcgtcgaagagtttgatttcgaaaccgcccagcgcaagcagcttcgcggc
aacatctatctcgccaaggtcacccgggtcgaaccgtccctgcaggccgccttcatcgaa
tacggcggcaatcgccatggcttcctggccttcagcgaaatccaccccgactattaccag
atcccggtcgccgaccgtcaggcgctgatcgaggccgacgaacgcgcccatcgcgaagcc
gaggaagagactgagaaccgctccaaccgcaagcgcccgcggcaccgcaattcgcgccgt
cgcggcagcagcgatcgtgtgcagagcgacgtcgtcgccggtgccagcctggatccgtcg
caggccgaacagccgcgcgatcccgcattcgtgtcgcatgacggcgaacatgaccatgcc
cacgacgccggccatcacgtcgccgacggcgagcatcatgatcatgacgaccatgagcac
agccacgcgcacgaccatgtcgaaggcgagcaggccctgggccacgccgttggcgaccat
gaccatgaggctcacgcgcaggtcgcgccggaggctgctgtctccgaggcgtcggccgtc
gagacgccctcctccgagattcatccggaccagccggtatcggccggcatcgcgccggac
gccgttgccgaaccgcagccggtggttgctgtcgctcacgacgatcacgcgcacgaccat
gcgcatgacgatcacggccatgacgagcatcacagcgacgcgcatgcggccgagaacgct
gcttatgccgaagacgtcccccatcacgacgatcacgccggagagcacgcggctgcttcg
gaagccgacgatcacgatgacgacgaagaggacggcgaggaagccgaagaggatatcgtc
gaatccgtcggcggcgacgacgttatggaagaagtgccggaacgcgcattccgtccgcgc
cgccagtacaagatccaggaagtcatcaagcgtcgccaggtgatgctggtccaggttgtc
aaggaagaacgcggcaacaagggcgcggcgctgaccacctatctgtcgctggccggccgt
tacgccgtgctgatgcccaacaccgcacgcggcggcggcatcagccgcaagatcacctcg
gcgcaggatcgctcccgcctcaaggaagtggtctcagatctcgacgtgccggaaggcatg
gggatcatcctgcgcaccgcaggcgcttcgcgcaccaagccggaaatcaagcgcgacttc
gaatacctgatccgcatgtgggaaaccgtgcgcgacatgacgctgaagtcgcaggccccc
accctcgtctacgaggaaggctcgctgatcaagcgctcgctgcgcgacctctacaacaag
gaaatcgacgagatccaggtcgccggcgaagccggctatcaggaggcccgcgacttcatg
cacatgctgatgccgagcaacgtccgcgcggtgaagcagtatcgcgacggtcagccgctg
ttttcgcggatgggtgtcgagagccagctcgacgcgatgttctcacctaccgtgcagttg
aagtccggcggctacatcgttctcaaccagaccgaagcgctggtctccatcgacgtcaac
tcgggacgctccaccaaggagcaccacatcgaggataccgcgctcaagaccaaccttgaa
gccgccgaggaagttgcccgtcagctccgcctgcgcgatctcgccgggctgatcgtcatc
gacttcatcgacatggacgagaagcgcaacaaccgcgcggtcgagcgcaagctcagcgac
tgcctgcggcaggatcgcgcccgcatccaggtcggacgcatctcgcatttcggcctgctc
gaaatgtcgcgccagcgcatccgcgccagcgtgctggagagttccacagaggtctgcccg
cattgcggcggctccggccacgttcgctcggtgtcctcggtcgcgctgcaattgctgcgc
ggtctggaagagatcctgatgaagggcgcgacgcataacctgatcgtacgcacccgcacc
gacgtcgcgctgtatgtgctcaaccacaagcgtgcccatctgcgggatctggaaagcagc
ttcaaggtcacgctcgctgtcatcgccgacccgaccgtcgccggtcagcagtccttcgtg
atcgatcgcggcgaacaggtgcacacgctggaggccgccaaggcggtgcttgcggcgcag
gtcgccgcgttcccggtacaggtcgaagagccttatgaggatgaagaatccttcgagacc
gaagcagaaatcgagaccgaggaaaccgaaggtctgaccgacgacgagggcgcctccgag
agcgttgctggcgaaaccgatgccgatgggcgtaagcgcaagcggcgccggcgccggcgc
ggtcgctcgggcgaggcccgcgaaggcggaccggcaccgcgcgaaggcggcgaatttccc
gccgcatcaaccaacgctgacggcctcgaagccgtgggcgacgacagcgaaggcgacgaa
gacgagtcggatgaacagcccggcgaagcccgtgccgatgcgcccgttgacggtgaacgg
cgcccgcgccgccgcggtcgccgcggtggacggcgtcggcgtggcggaccggaagagggt
ctggtcggctcgatttccgatgaactcggcccgatcccggcgtcggaagcaatcgaggct
gtcgccgatttcgacggcgtcacaccgccccagcagccattggaagccccggcggatagc
gtgacgtcacctgtcgagcagcaacagagccgtcacgacgccgttccgatgttcgctccg
tctgctcccgagccggcgccagttgcgcctgtcgcggagccggcgcccgctgcgcctgtc
gtgactgcgccggaaccggtctcgcaggacgatgagaaggccgccgcacgtcgccgttcc
acggtgcgcgagaaggtcagcttcgcttcggccgaaccgcagtctgccccgaccccggtc
gcggctgcgccgcagctcgccccggcgccggctgctgcttccgcgcccgccgcccccgaa
gcggcgcccagcccacagccgcgcaaggcaggctggtggtcacgcgccttcggcaacggc
gagtaa
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