Rhodopseudomonas sp. P2A-2r: ONR75_29095
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Entry
ONR75_29095 CDS
T10299
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhor Rhodopseudomonas sp. P2A-2r
Pathway
rhor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhor00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ONR75_29095 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhor03021
]
ONR75_29095 (rpoD)
Transcription machinery [BR:
rhor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ONR75_29095 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UZE48764
LinkDB
All DBs
Position
complement(6037092..6039200)
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AA seq
702 aa
AA seq
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MATKAKTLQVKDKEKDDKAADAPEKDSPDAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NEVLPSDTTSPEQIEDIMSMLSDMGINVSESDDADSDEEETKEEAEEEPDNELVEVTQKA
VTETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTF
QAIIIWRDELNEGKIFLRDIIDLEATYAGPDAKNNMNPALIAAPVAADGDEGTAAVAAPP
AAPPTATPFRAAPPRPAPAAPAADAPSEGDGDGDDDEFENQMSLAAIEAELKPKVVETFD
KIADNYKKLRRLQEQDIANQLQSEQLSPAQERKYKKLKDEIIVEVKSLRLNQARIDSLVE
QLYDINKKLVSFEGRLLRLGDSHGVAREDFLRNYQGSELDPKWLNRVSKLSAKGWKNFVH
HEKDKIKDLRGEIQQLAALTGLEIGEFRKIVHGVQKGEREARQAKKEMVEANLRLVISIA
KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
IPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPV
GDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDH
TLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcaaagacgctgcaggttaaggacaaggaaaaagacgacaaggctgca
gacgccccggaaaaggattccccggacgcgccgtcgccgttgctcgacctgtcggacgcc
gccgtcaagaagatgatcaagcaggccaagaagcgcggcttcgtgaccttcgatcagctc
aacgaagtcttgccttcggacaccacctcgcccgaacagatcgaggacatcatgtcgatg
ctctccgacatgggcatcaacgtctccgagtcggatgacgccgatagcgacgaggaagag
accaaggaagaggccgaggaagaacccgacaacgagttggtcgaggtcacccagaaggcc
gtcaccgaaaccaagaagtccgagcccggcgagcgcaccgacgatcccgtccgcatgtat
ctgcgcgagatgggcaccgtcgagctgctgtcgcgcgagggcgaaatcgccatcgccaag
cgcatcgaggccggccgcgaggcgatgatcgcgggtctctgcgaaagcccgctgaccttc
caggccatcatcatctggcgcgatgaactcaacgaaggaaagatcttcctccgcgacatc
atcgatctcgaagcgacttacgccggccccgacgccaagaacaacatgaacccggcgctg
atcgccgcaccggtggccgccgatggcgacgagggcaccgccgccgtggccgcacctccg
gccgccccgccgacggccaccccgttccgcgccgcgccgccgcgcccggcgcccgctgcg
cccgccgccgacgccccctcggaaggcgacggtgacggcgacgacgacgagttcgagaac
cagatgtcgctggcggccatcgaggccgagctgaagccgaaggtggtcgagaccttcgac
aagatcgccgacaactacaagaagctgcgccgcctgcaggagcaggacatcgccaaccag
ctgcagagcgagcagctgtcgccggcccaggagcgcaagtacaagaagctcaaggacgag
atcatcgtcgaggtgaagtcgctgcgcctcaaccaggcgcgtatcgattcgctggtcgag
cagctctacgacatcaacaagaagctggtgtcgttcgaaggtcgcctgctgcgcctcggc
gacagccacggcgtcgcccgcgaagacttcctgcgcaactaccagggctccgagctcgat
ccgaagtggctgaaccgcgtctccaagctgtccgccaagggctggaagaacttcgtccat
cacgagaaggacaagatcaaggacctgcgcggcgagatccagcagctcgcggccctcacc
ggcctcgagatcggcgaattccgcaagatcgtgcacggcgtgcagaagggcgagcgcgaa
gcccgccaggccaagaaagagatggtggaagccaacctccgtctcgtcatctcgatcgcc
aagaaatacaccaaccgcggcctgcagttcctcgatctgatccaggaaggcaacatcggc
ctgatgaaggcggtcgataaattcgaataccgccgcggctacaagttctcgacctacgcc
acctggtggatccgccaggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgc
attcccgtgcacatgatcgagaccatcaacaagatcgtgcgcacgtcccggcagatgctc
aacgagatcggccgcgagccgaccccggaggaactggccgagaagctgggcatgccgctg
gagaaggtgcgcaaggttctcaagatcgcgaaagagccgctgtcgctggaaaccccggtg
ggtgacgaggaagattcgcatctcggcgacttcatcgaggacaagaacgcgatcctgccg
atcgacgcggcgatccagtccaacctgcgcgagaccacgacccgcgtgctggcctcgctc
accccgcgtgaagagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccac
acgctggaggaagtcggccagcagttctcggtgacccgcgagcgcatccgccagatcgaa
gccaaggcgctgcgcaagctgaagcatccgtcgcgaagccggaagctcaggtcgttcctg
gacaactaa
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