Rhodococcus sp. M8-50: QWW67_24090
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Entry
QWW67_24090 CDS
T10459
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhos Rhodococcus sp. M8-50
Pathway
rhos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QWW67_24090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhos03400
]
QWW67_24090
Enzymes [BR:
rhos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QWW67_24090
DNA repair and recombination proteins [BR:
rhos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QWW67_24090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WVN69826
LinkDB
All DBs
Position
5276400..5278661
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AA seq
753 aa
AA seq
DB search
MTTRTFEGRRLNLTNLDKVLYPSTGTTKADVVDYYVAVAPVLLPHVAGRPGTRKRWPEGV
GGESFFEKNLASHAPKWLTRKTVHHKQRSVTYPVFDSVASLAWLGQQAALELHVPQWRFS
GSVPGPATRIVFDLDPGEGVTLAQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASTVAKQVAINLETLHPDLVTATMAKAVRGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLRQLRFDEVLARLEAGPDPLAALDPPLPESDALTEYRHKR
DPSRTPEPVPATVGSGPGNSFVIQEHHARRLHYDLRLERNGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGGMTIWDTGTYDTEKWRDDEVIVRLHGARVQGRY
ALIRTAGNQWLAHRMKDQSAPPGPPTSFPRDLEPMLATPGEVTDLDADEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRILDGHEVVLDGEVVACDTLGVTSFRQLR
TGGTPQYFVFDVLFLDGVTLYRKPYSDRRRVLDALAAAADGLVVPELLHGNGSEALEEST
RRGWEGVVAKRRNSVYVPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVQ
GEAGLEYVGRVGTGFDEPQLAELSAAMAGLRRRTTPFAGDVPREDARDAVWVSPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVVRGSG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctg
tacccgagcacgggcacgacgaaggccgacgtggtcgactactacgtcgccgtcgccccg
gtgctgctacctcacgtcgcgggccggcccggcacccgcaaacgctggcccgagggtgtc
ggcggcgagtcgttcttcgagaagaacctcgcctcccacgcgccgaagtggctcacccgc
aagactgttcaccacaagcagcggtcggtgacgtatccggtcttcgactccgtggcgtcg
ctggcctggctggggcagcaggcggcactcgagctgcacgtgccgcagtggcggttctcg
gggtccgtcccgggtcccgcgacgcggatcgtgttcgacctcgacccgggggagggggtc
acgctggcgcagtgcgccgaggttgcccgcctggtgcgcgacatggtcggcgggctcggc
tggcccgcctacccggtcaccagcggcagcaaggggatacacctgtatgtgccgctcgac
cgcgagctcgcgccgggcggggcgtcgacggtggcgaagcaggtggcgatcaacctcgag
acgctgcatcccgacctggtcaccgccaccatggccaaggccgtgcgcggtggccgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgcgccgtattccctgcgc
ggccgggagcagccgtgggtcgccgcgccccgcacctgggacgaactcgacgaccccggg
ttgcgccagttgcggttcgacgaggtgctcgcgcgcctcgaggccggacccgacccgctc
gccgcgctcgacccgccgctgcccgagtccgacgccctgaccgagtaccggcacaagcgc
gacccgtcccgcacccccgaacccgtccccgccaccgtgggatccggaccgggcaattcc
ttcgtcatccaggagcaccacgcccgccgcctgcactacgacctgaggctcgagcgcaac
ggggtgctcgcgtcgtgggcggtgccgaagaaccttccggacgatcccggccgcaacaac
ctcgcggtgcgcaccgaggaccatccgctcgagtacctcaccttccacggcgtgatcccc
aagggggagtacggcgccggcggcatgacgatctgggacaccggcacctacgacaccgag
aaatggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcagggccggtac
gcgctgatccgcacggccggcaaccagtggctcgcgcaccgcatgaaggaccagagcgcg
ccgccgggcccgccgacgagcttcccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccgatctcgacgccgacgaatgggcattcgagggcaagtgggacggctaccgc
gccgtcgccgagatcgagaacgggcagctgcggctgcattcgcgttccggccgcgacatc
accggcgactaccccgctctcgccgatctcacccgcatcctcgacgggcacgaggtggtc
ctcgacggcgaggtggtcgcgtgcgacaccctcggtgtcacaagcttccggcagctgcgg
accgggggcaccccgcagtacttcgtgttcgacgtcctcttcctcgacggggtgaccctg
taccgcaagccgtattccgaccggcggcgcgtgctcgacgcgctcgccgccgcggccgac
ggcctggtcgttccggaactgttgcacggcaacggatccgaagcgctggaggagagcacc
cggcggggctgggagggggtggtggccaagcggcggaactcggtgtacgtgccgggtcgg
cgcagccccgactgggtgaagtcgaagaactggctcacccaggacgtcgtcatcgggggc
tggcgcctcggcaagggggcccgcgccggcaccttcggctcgctgctggtcggcgtgcag
ggtgaggccgggctggagtacgtcggccgcgtcggcaccggcttcgacgaaccccagctc
gccgaactgtcggccgccatggcgggtctgcggcgccgcaccacccccttcgccggcgac
gtcccgcgcgaggacgcgcgggacgcggtgtgggtgagcccgaagctggtgggggaggtg
cggttccgggagtggaccgacgccggcaagctctggcatccgagctggcgcgggttgcgc
gacgacatcgatccgcaggacgtggtccgcggcagcggatga
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