Rhodococcus sp. 11-3: KZJ41_06450
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Entry
KZJ41_06450 CDS
T10209
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rhou Rhodococcus sp. 11-3
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhou03019
]
KZJ41_06450
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KZJ41_06450
Messenger RNA biogenesis [BR:
rhou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KZJ41_06450
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Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
DUF8548
Motif
Other DBs
NCBI-ProteinID:
USC16530
LinkDB
All DBs
Position
complement(1382997..1385312)
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AA seq
771 aa
AA seq
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MCRQDGPRLAQFTAGLGFTLDDFQVRACRALDEGRDVLVCAPTGAGKTIVGEFAVHLALA
AGGKCFYTTPIKALSNQKHADLAAQLGDERVGLLTGDVSVDPHAPVVVMTTEVLRSMLHG
RSPLLDGLTHVVMDEVHYLADRERGAVWEEAILYLPGTVRLVSLSATVSNAEEFGAWLGR
VRGATTVVVEETRPVPLHQHVLAGGRLFDLFSPTTGAIDENLVRYVAHRQLVDAAPAVPS
RRRRRRTATPGPAGVDRPELVARLEAESLLPAIWFRFSRSGCDEAVAECLRSSLRLTEAA
DVTRIRRIVDRHTAGLSPADLDALGFADWLDGLERGFAAHHAGMVPVFRHAVEELFGLGL
VRIVFATETLAVGVNMPARTVVLERLVKHTTAGPVRLTAGEYTQLTGRAGRRGIDREGHA
VVLWSPEVQPATVAGLASTRTYPLNSSLRVGYNTAVNLVDRLGVAGARDLLGRSFAQFQA
EHSVAALATAATTNAATLHRLDDELGDAEGFAEYQQLRERLAAARTSGTADAVTALARAV
RSHPGHRHADRERLITVAERRRALAADTEVLRGQVAAATGRLVETFDRVLGLLDERGYIL
SDPYTGEAVATDHGRMLGRIYCGSDLLVAECLRTGVWAGLDPAELAAVVSSVLGESRRPA
PGGGAPTAGVDAAYRATVRLWRELSDAERRHGLPAGPEPDPVAMRAIHRWARGDGVSAAL
REAAESDLSAGDLVRRYLRTLDLLGQIGRGECPVEPAGFTAAGYPQRSPVR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcaggcaggacgggccgcggctcgcgcagttcaccgcgggactcggcttcacgctc
gacgacttccaggtccgcgcctgtcgcgctctcgacgagggccgggacgtgctcgtctgt
gcccccaccggcgccggcaagacgatcgtcggcgagttcgcggtgcacctggcgctcgcc
gccggcggcaagtgcttctacacgacgcccatcaaggccctgagcaaccagaagcacgcc
gacctcgccgcgcaactcggggacgagcgggtcggcctgctcaccggagacgtctcggtc
gacccgcacgcacccgtggtcgtcatgacgaccgaggtgctgcgcagcatgctgcacggc
cgctcgcccctgctcgacgggctcacccacgtcgtgatggacgaggtccactacctcgcc
gaccgcgagcgcggcgcggtgtgggaggaggccatcctctatctacccggcaccgtgcgc
ctggtgagcctgtccgcgacggtcagcaacgccgaggagttcggtgcctggctgggccgg
gtccgcggcgcgaccaccgtcgtcgtcgaggagacccggccggttccgctgcaccagcac
gtgctcgccgggggccggctgttcgacctgttctcccccaccaccggtgcgatcgacgag
aacctcgtgcggtacgtcgcgcatcgccagctcgtcgacgccgcccccgccgtcccgtcg
cgtcgccggcgccgccgcacggccacgcccggcccggccggcgtcgaccggcccgagctc
gtcgcgcggctcgaggccgagtcgctgctgccggcgatctggttccgcttcagccgcagc
ggctgcgacgaggccgtcgccgaatgcctgcgctcgtcgctgcggctcaccgaggccgcc
gacgtcacccgcatccgccgcatcgtcgaccggcacaccgccggcctctcccccgccgac
ctcgacgcgctcggattcgccgactggctcgacggactcgaacgcggcttcgccgcccat
cacgcgggcatggtgccggtattccggcacgccgtggaggagctgttcggcctcggcctc
gtccggatcgtcttcgccacggagaccctcgccgtgggcgtcaacatgcccgcacggaca
gtcgtgctcgaacgcctcgtcaagcacaccaccgccgggccggtccgcctcaccgccggc
gagtacacccagttgacgggacgggccggccgtcgcggcatcgatcgggagggccacgcg
gtcgtgctgtggagcccggaggtgcagccggccaccgtcgcggggctcgcctccacccgc
acctacccgctgaacagctccctgcgggtgggctacaacaccgctgtcaacctcgtcgac
cggctcggcgtcgccggagcccgggacctgctcggccggtccttcgcccagttccaggcg
gagcattcggtggccgcgctggccaccgcggcgacgacgaacgcggcgacgctccaccgg
ctcgacgacgaactcggggacgccgagggtttcgccgagtaccagcagttgcgcgagcgg
ctggccgcggcgcgcaccagcggcaccgccgacgcggtgaccgctctcgcgcgggccgtg
cgttcgcaccccgggcaccggcacgccgatcgggaacgcctgatcaccgtcgccgagcgc
cgtcgcgcgctggccgccgacaccgaggtgctgcgcgggcaggtcgccgccgccaccggc
cggctcgtggagacgttcgaccgtgtcctcgggctgctcgacgaacgcgggtacatcctg
tccgacccgtacaccggcgaggcggtggccaccgaccacggccggatgctgggccggatt
tattgcggcagcgaccttctcgttgccgagtgcctgagaaccggcgtgtgggcgggcctc
gatccggccgagctggccgccgtcgtgtcgagtgtgctcggcgaatcgcgacggccggcg
cccggcggcggagcccccacggccggtgtcgacgccgcgtaccgcgcgacggtccggctg
tggcgggaactgtccgacgcggagcgccggcacggcctgcccgcgggccccgaaccggat
ccggtggcgatgcgcgcgatccaccggtgggcccgtggcgacggcgtgtccgcggccctg
cgcgaggcggcggagtcggatctgtcggcgggcgatctcgtccggcgctacctgcgcacc
ctcgacctgctcgggcagatcggcaggggcgagtgcccggtggagccggccggcttcacc
gcggccgggtacccacagcgctctccagttcggtga
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