Rhodococcus sp. 11-3: KZJ41_07255
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Entry
KZJ41_07255 CDS
T10209
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KZJ41_07255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_07255
Enzymes [BR:
rhou01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KZJ41_07255
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KZJ41_07255
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KZJ41_07255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
DprA_WH
TMEM106_N
DUF7129
Motif
Other DBs
NCBI-ProteinID:
USC16672
LinkDB
All DBs
Position
complement(1545803..1546669)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGAVVGRIDVAALSVLQTADPPITVLQGRDVTGVSRFGKFLA
VDCAGLWLVTHLSRAGWLRWQDNPSPAPPKLGRGPLALRVHLFTPDAATPAFDLTEASTR
KRLAVWIADRPQQVPGIARLGPDALAVTADELAARLAGSTARLKTALTDQQVLAGIGNAY
SDEILHVARLSPFAPAGRLTDEQRQALYDALRTVLLDAVSRSVGQDAARLKGEKRSGMRV
HARTGLPCPECGDTVRGVAYAERSFQYCPTCQTGGKILADRRLSRLVK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggaggccctggcggtgttcctgcgcgagcacgccgtcggt
gccgtcgtcggccggatcgacgtggcggcgctcagtgtcctgcagaccgccgacccgccg
atcaccgtgctgcagggccgcgacgtcaccggcgtgtcccgcttcgggaagttcctggcc
gtcgactgcgccggtctgtggctcgtcacgcacctgtcgcgggcggggtggctgcgctgg
caggacaacccgtcgccggcaccgccgaagctgggccgggggccgctcgcgctgcgggta
cacctgttcacccccgacgccgccacccccgccttcgacctcaccgaggccagcacccgc
aagcgcctcgccgtgtggatcgccgaccgtccgcagcaggtgcccggcatcgcccggctc
ggtcccgacgccctagccgtcaccgccgacgagctggccgcgcggctggcgggcagcacc
gcacgcctgaagaccgccctcaccgaccagcaggtgctcgccgggatcggcaacgcctac
tccgacgagatcctgcacgtcgcccggctgtcgccgttcgcgccggcgggccggctcacc
gacgagcagcggcaggcgctgtacgacgcgctgcgcacggtgctcctcgacgccgtgagc
cgttccgtgggccaggatgccgcgcggctcaagggtgagaagcggtccgggatgcgggta
cacgcccgcacgggcctgccgtgcccggagtgcggcgacaccgtccgcggggtcgcctac
gccgaacgttccttccagtactgccccacgtgccagaccggcgggaagatcctcgcggac
cggcggctgtcgcggctggtcaagtga
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