Rhodococcus sp. 11-3: KZJ41_07925
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Entry
KZJ41_07925 CDS
T10209
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KZJ41_07925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_07925 (mfd)
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZJ41_07925 (mfd)
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KZJ41_07925 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MEDS
LSDAT_prok
DUF3638
IstB_IS21
AAA_22
UB2H
DUF7525
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
USC16790
LinkDB
All DBs
Position
1682296..1685928
Genome browser
AA seq
1210 aa
AA seq
DB search
MSDVSVTPLSGLARIALADAQLERVAALAGTAEQALVAPPSARPFVAAALAAKTPLLVVT
ATGREADDLTAELHEMLGDVVAQFPSWETLPHERLSPSADTVGRRLQVLRRLAHPEDRDY
GPELRVIVATVRSLVQPMAPRLGDIEPVTLRVGAEHDFDELIERLVELAYTRADMVGKRG
EFAVRGGILDVFPPTADHPVRVEFWGDEVTELRPFSVADQRSIPELEVGTLIAPPCRELL
LTEQVKERAARLAQDNPADAALVEMLDKMASGIPVEGMEALLPVLQTGELQLLTDVVPAG
THVLLCDPEKVRTRAADLMRTGQEFLEASWTAASLGGAAPLDTANMKGVDLAASAYRPLT
QVRETAEAAGRPWWTLSPLASGADTEVVLDVQPAPEVRGSDELLTMLFANLRAHVTTGGR
AAIVVAGAGTGQRVLERLQENDVPAARLDPGAEPVRGTVGVLCGALHDGVVLPGDGADVP
GLVLVTESDLTGNRVTAAEGRRTPVKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTV
GGARREYLVIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARQAAPGHAFAPDTPWQKEMEDAFAFTETQDQLTVISEVKADME
KAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERMASFP
VTVKGLSRFTDPAESKETIAALADGAVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYADKQ
VAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDTLEKTVQGF
WERQYDVLVCTTIVETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAYFLYP
PEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAFRAAADGRPVATEEAAKEVRVDLPVDAHIPPDYVTSDRLRLEAYRKLAAAHD
DDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYALEEVAVSGTQLKISPMHLPDS
KQMRLKRLYPAAQYRATSGLVQLPLPRTGGVGSDRVRDVELLQYIADFLLALDGKAQGSV
DVRVPAVASV
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacgtgtccgtcacccccctgtccggattggcgcggatcgcgctggccgacgct
cagctcgaacgtgtggccgccctcgccgggaccgccgaacaggccctggtggccccgccg
tcggcccggccgttcgtcgccgccgcgctggccgcgaagacgccgctgctcgtggtgacc
gcgaccggccgcgaggcggacgacctgacggccgaactgcacgagatgctcggcgacgtc
gtcgcgcagttcccgtcgtgggagacgctgccgcacgagcggctctcgcccagcgccgac
accgtcggccgccggttgcaggtgctgcgccggctcgcccaccccgaggaccgcgactac
ggccccgagctgcgggtgatcgtcgcgaccgtgcggtcgctggtgcagccgatggccccg
cgtctgggcgacatcgagcccgtcaccctgcgggtcggcgcggagcacgacttcgacgag
ctgatcgagcggctcgtcgagctggcctacacccgcgccgacatggtcggcaagcgcggc
gagttcgcggtgcgcggcggcatcctcgacgtcttcccgccgaccgcggaccatccggtg
cgggtcgagttctggggcgacgaggtcaccgaactgcgcccgttctccgtcgccgaccag
cggtccatccccgaactcgaggtgggcaccctcatcgccccgccctgccgggagctgctg
ctcaccgagcaggtcaaggagcgcgcggcccggctggcgcaggacaacccggccgatgcg
gcgctggtggagatgctcgacaagatggcctccggtattccggtcgagggcatggaggcg
ctgctgccggtgctgcagacgggcgagctgcagctgttgaccgacgtcgtgccggccggc
acgcacgtgctgctgtgcgatccggagaaggtgcgcacccgcgcggcggatctgatgcgc
accggtcaggagtttctcgaggcgtcgtggaccgcggcctcgctcggtggtgccgcgccg
ctggacaccgccaacatgaagggcgtggacctggccgcgtcggcgtaccggccgctgacc
caggtgcgggagacggcggaggcggcgggccggccgtggtggacgctgagcccgctggcg
tcgggcgccgacaccgaggtcgtgctcgacgtgcagccggcgccggaggtgcgcggctcg
gacgagctgctgacgatgctcttcgcgaacctgcgcgcgcacgtcaccaccggcgggcgg
gccgcgatcgtcgtcgcgggcgccggcaccgggcagcgggtgctcgagcgcctgcaggag
aacgacgtgcccgccgcgcgtctcgatccgggcgccgagccggtgcgcggcacggtcggg
gtgctgtgcggcgcgctgcacgacggcgtggtcctgccgggcgacggcgcggacgtgccc
ggcctggtgctcgtcaccgagtccgacctcacgggcaaccgggtgaccgccgccgagggg
cgccgcacgccggtcaagcgtcgcaaccaggtcgacccgctggcgctcaccgccggggac
atggtggtccacgaccagcacggcatcggccgtttcgtcgagatggtggaacggaccgtg
ggcggtgcccgccgcgagtacctggtcatcgagtacgccccgagcaaacgcgggcagccg
ggtgaccggctgttcgtgccgatggagtccctcgatcagctctcccgctacgtcggcggc
gagatgcccgccctgagcaagctcggcggctccgactgggccaacacgaaacgcaaggcg
cgcaaggctgttcgtgagatcgccggggagctggtgcagctgtacgcggcgcgccaggct
gcgcccgggcacgcgttcgccccggacaccccgtggcagaaggagatggaggacgcgttc
gcgttcaccgagacccaggatcagctcaccgtcatctccgaggtcaaggccgacatggag
aaggcggtcccgatggaccgcgtcgtcatcggcgacgtcggctacggcaagaccgagatc
gcggtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtcgcggtgctggtgccc
accacgctgctggcgcaacagcacctgcagaccttcacggagcggatggcgtcgttcccc
gtcaccgtcaagggcctgagccgcttcaccgatcccgccgagtcgaaggagacgatcgct
gccctcgccgacggcgcggtcgacatcgtcgtcggcacccaccggctgctgcagaccggc
gtgcgctggaaggacctcggcctcgtgatcgtggacgaggagcagcgattcggcgtcgag
cacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctgaccatgtccgcgacg
ccgattccgcgcaccctggagatgagcatggccggcatccgcgagatgtcgacgatcctc
accccgcccgaggagcggcacccggtgctcacctacgtgggcgcctacgcggacaagcag
gtcgccgccgccatccgtcgcgagctgctgcgcgacgggcaggtgttctacgtgcacaac
cgggtcagctcgatcgacaaggccgccaagcggattcgtgacctcgtccccgaggcgcgg
gtggcggtcgcgcacgggcagatgaacgaggacaccctcgagaagaccgtgcagggcttc
tgggaacgtcagtacgacgtcctggtgtgcaccaccatcgtcgaaacgggcctggacatc
tccaacgccaacaccctcatcgtcgaacgcgccgattcgctcggcctgtcgcagctgcat
cagctgcgcgggcgcgtcggccggtcccgcgagcggggttacgcgtacttcctgtatccg
ccggagaagccgctgaccgagacggcgtacgaccggctcgccacgatctcccagaactcc
gacctcggtgcgggcatggccgtggccatgaaggacctcgagatccgcggcgcgggaaac
gtgctgggcgcggagcagtccggtcacgtcgccggcgtcgggttcgatctgtacgtgcgg
ctcgtcggcgaggcggtggaggccttccgggccgccgcggacggccggcccgtcgccacg
gaggaggccgccaaggaggtgcgcgtggacctgccggtcgacgcccacatcccgccggac
tacgtgacctccgaccggctgcggctcgaggcctaccgcaagctcgccgcggcgcacgac
gacgacgcgatcgccgcggtggtcgaggaactcgtcgaccgctacggcccgctgcccgag
gaggtcggccggctggtgtcggtggccaagctgcgcctgctgtgccgcgagtacgccctc
gaggaggtcgcggtctccggtacccagctgaagatctcgccgatgcatctgccggattcg
aagcagatgcgactcaagcggctctacccggcggcgcagtaccgggccacgagcggcctg
gtgcagctgccgttgccgcggaccggtggggtgggctccgatcgggtgcgcgacgtcgag
ttgctgcagtacatcgcggacttcctgctcgccctcgacggtaaggcgcagggttcggtg
gacgtgcgcgtgccggccgtcgcgagcgtgtga
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