Rhodococcus sp. 11-3: KZJ41_08520
Help
Entry
KZJ41_08520 CDS
T10209
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KZJ41_08520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_08520
Enzymes [BR:
rhou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KZJ41_08520
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KZJ41_08520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
USC16894
LinkDB
All DBs
Position
1811410..1814706
Genome browser
AA seq
1098 aa
AA seq
DB search
MTRTVSKFDLLGALPTGTTVLEASAGTGKTYAIVGLATRFVAEGAAELSQLLLVTFSRAA
TQELRERTRDRFAGVARALADPEAARHHPDELIRHLAGGDVATHRRRLLRALSDFDAATI
ATTHGFCQRMLDELGTAGERDTDAVLVEDVDDLTIEVIADLYLRRYGRADRAPISHAEAA
EAARAAVFDPQAALAPEGADGTPAGERVEFARAVRAEVDRRKRLAGLRDYDDQLALLHAV
LTDPEHGEVACRRIGSRFRVVLVDEFQDTDPLQWEILRSAFHRRTTLVLVGDPKQAIYAF
RGAEVLSYLGAMEFADGHQELVCNWRSDGNLLAALDHLYGGAALGDPRIVAHPVEAAQPA
SRIAGAAPLRLRHLPRTGAGPCGASGFPKAQALQERVARDVAADVAALLGGDVTVDLGAG
RRPVEPGDVAVLVRTNAQVALVHGALTGAGIPAVLAGGTSVFATPAAREWLRVLQALEQP
HRPDRVRLAALTSLMGRTAEDVDTRGDELVAAIGTLLRELDVVFERSGFAALFERLAAFC
DLEPRLLGWPGGERELTDLRHLAQLLDETASAEALGVTALTRWLTERIAEAGTARADRSR
RLDSDAAAVQVLTVHASKGLEFPVVYVPFAWESGVRSKPDRLLLHDDDGRRVLDVGGEGS
AGYGERRRRHDEEVAGEELRLLYVALTRARCHLVLWWAPGYSTSGAPLHRMLFGRVPGTS
EIAHKARVPEDPIVAQQLTGWAGRAAGTASVEAVGSAPIPAVTWVRPHETVVELEAARFD
RELDDAWRRTSYTALTAAAHEGPGAGAEAEQPAKTDEPEEPPLLPADAADDGIASPMNPL
PGGAVFGTLVHAVLEVVDTAAADLGAELLRCCRDTVAEQFSDVDPEELAEALLPVLRTPL
AGGAGTLADIAPADRLAELDFELPLAGGDDPVATTVTLDGVARLLRAHLPAGDPFASYAD
LVGILEPTPLRGYLTGSIDSVLRIHGTEPRFVIVDYKTNRLGPEELTTAHYTRDRMAEEM
LRAHYPMQALLYAVALHRYLRWRLPGYDPAVHLGGVQYLFVRGMVGPDTPAGCGVFDWAP
PPALVAELSDLLAGKEVP
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgaaccgtgtcgaagttcgacctgctcggggcgctcccgacgggcaccaccgtg
ctcgaggccagcgcgggaaccggcaagacctacgccatcgtcggcctggccacccggttc
gtcgccgagggggcggcggagctgtcgcagctgctgctggtgacgttcagccgcgccgcg
acgcaggaactgcgcgaacgcacccgggaccggttcgccggcgtcgcgcgggcgctggcc
gacccggaggccgcgcggcaccaccccgacgagctgatccggcacctcgccggcggcgac
gtggccacgcaccggcgccggctgctgcgggccctgtccgacttcgacgccgccaccatc
gccaccacgcacggattctgccagcgcatgctcgacgagctcggtaccgccggcgagcgg
gacaccgacgcggtgctcgtcgaggacgtcgacgacctgaccatcgaggtcatcgcggac
ctgtacctgcgccggtacgggcgggcggacagggcaccgatctcgcatgccgaggccgcg
gaggccgcgcgcgccgcggtcttcgacccccaggccgccctcgcccccgagggcgccgac
ggcacgcccgccggggaacgcgtcgagttcgcccgggccgtgcgggccgaggtcgaccgg
cgcaagcgcctcgcgggcctgcgggactacgacgaccagctcgcgctgctgcacgcggtg
ctgaccgacccggagcacggcgaggtcgcgtgccgccgcatcggctcccgcttccgcgtc
gtgctcgtcgacgagttccaggacaccgacccgctgcagtgggagatcctgcgcagcgcg
ttccaccgccgcacgaccctcgtcctcgtcggcgacccgaagcaggccatctacgcgttc
cgcggcgccgaggtgctgagctacctcggcgcgatggagttcgccgacggccaccaggaa
ctcgtctgcaactggcgcagcgacgggaacctgctcgccgccctcgaccatctgtacggc
ggtgcggccctgggtgatccgcggatcgtcgcgcacccggtggaggcggcgcagccggcg
tcccggatcgccggggcagcgccgctgcggctgcggcacctgccgcggaccggggccggc
ccgtgcggcgcctccggtttcccgaaggcccaggcgctgcaggaacgggtggcacgcgat
gtcgcggccgacgtcgcggccctgctcggtggcgacgtcaccgtcgacctcggggccggc
cgccggcccgtcgaacccggcgacgtcgcggtcctggtgcgcaccaatgcgcaggtcgcc
ctcgtccacggggcgctcaccggtgccgggatcccggccgtgctggccggcgggacgagt
gtcttcgcgaccccggccgcgcgggaatggctgcgggtgctgcaggcgctcgaacagccg
caccgccccgaccgggtgcggttggccgctctgacctcgctgatgggccgcaccgccgag
gacgtcgatacccggggcgacgaactcgtcgccgcgatcggcaccctgctgcgcgaactg
gacgtcgtgttcgagcggtccggcttcgccgcgctcttcgagcgcctcgccgcgttctgc
gacctcgaaccgcggctgctgggatggccgggcggcgagcgggaactgaccgatctgcgg
cacctcgcgcaactgctcgacgagaccgcgtcggccgaggcgctgggtgtcacggcgctg
acccgctggctgacggaacggatcgccgaggcgggcacggcccgcgccgaccgcagccgc
cgcctcgacagcgacgccgccgcggtgcaggtgctcaccgtccacgccagcaagggcctc
gaattccccgtcgtgtacgtgccgttcgcgtgggagtcgggcgtccggtcgaaacccgac
cggctcctgctccacgacgacgacggccgccgcgtcctcgacgtcggcggcgagggcagc
gcgggctacggcgagcgccgccggcgccacgacgaggaggtggccggcgaggaactgcgc
ctgctctacgtcgcgctgacccgcgcccgctgtcacctggtgctgtggtgggctccgggg
tacagcacctccggtgccccgctgcaccgcatgctcttcggccgcgtgccgggcacctcc
gagatcgcccacaaggcgcgcgtgcccgaggacccgatcgtggcgcagcagctgaccggg
tgggccggccgggccgcaggcacggcgtccgtcgaggccgtcggatcggcgccgatcccc
gccgtcacgtgggtgcggccgcacgagaccgtcgtggaactcgaggccgcccgcttcgac
cgcgagctcgacgacgcctggcggcgcacctcctacaccgccctcaccgccgctgcccac
gaggggcccggcgcgggcgccgaggccgaacagcccgcgaagaccgacgaacccgaggaa
cccccgctgctgccggccgacgcggcggacgacggcatcgcgtccccgatgaacccgctg
cccggcggggccgtgttcggcaccctcgtgcacgcggtgctcgaggtcgtcgacaccgcg
gccgccgacctcggggcggaactgctgcgctgttgccgcgacaccgtcgccgaacaattc
tccgacgtcgaccccgaggagctggccgaggccctgctgccggtcctgcgcaccccgctc
gccgggggcgcgggcacgctcgccgacatcgctcccgccgaccggctcgccgaactcgac
ttcgagctgcccctcgccgggggtgacgaccccgtcgccaccaccgtcaccctcgacggt
gtcgcccggctgctgcgtgcccacctgcccgccggcgacccgttcgcgtcctacgccgat
ctcgtgggcatcctcgagccgaccccgctgcgcggctacctcaccggcagcatcgattcg
gtcctgcggatccacggcaccgagccgcgattcgtgatcgtcgactacaagacgaaccgg
ctcgggccggaggagctcaccaccgcccactacacccgggaccggatggccgaggagatg
ctgcgcgcccactacccgatgcaggcgctgctgtatgccgttgccctgcaccggtatctg
cggtggcggctgcccgggtacgacccggccgtgcacctcggcggcgtgcagtacctgttc
gtgcgcggcatggtcggcccggacacccccgcgggctgcggcgtgttcgactgggcgccg
ccgcccgccctcgtcgccgaactgtccgacctgctggcaggcaaggaggtcccgtga
DBGET
integrated database retrieval system
