Rhodococcus sp. 11-3: KZJ41_09655
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Entry
KZJ41_09655 CDS
T10209
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZJ41_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhou03019
]
KZJ41_09655
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_09655
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZJ41_09655
Messenger RNA biogenesis [BR:
rhou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZJ41_09655
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KZJ41_09655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
LSDAT_prok
Cas3-like_C_2
HTH_20
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USC17107
LinkDB
All DBs
Position
complement(1994784..1996487)
Genome browser
AA seq
567 aa
AA seq
DB search
MTATVQDAADTTGPRDIRAELRAAARRVFGWEELRPGQLDAMEPLVRGRDVLAVMATGSG
KSAIYQVPALLIEGTTLVISPLIALQNDQIAGLDATSAPDAVAINSRQRASATAAAWETI
RERTVEYVFLAPEQLANDEVVARLADAHVSLVVVDEAHCVSAWGHDFRPDYLRLADALDR
LGRPPVVALTATASPPVRQEIVEELRLRDPVVIASGFDRPNIDLAVERYTTDAEKRRAVI
ETVAGLETPGLLYTATRKDAEFYAAELAERGRRAAAYHAGLPSATRERVHHGFLDGEYEV
VVATSAFGMGIDKPDVRFVAHASAPDSVDSYYQQIGRAGRDGLEAKALLFYRPEDLSLAK
FFTTHRPDEELLGRAFTALRRTKAPTRLKDLRAELDTRGRTLTNAVNLLERAGVVSSGRK
GFTARTVEVEIAVRRAAEVAAVGERMDRSRVEMMRGYAETRGCRRQFLLGYFGESLLEPC
GHCDCCREGIPESRPEPANHVRHESIPLHTRVVHAQWGAGEVMSAETDRITVLFDGYGYR
TLSLEAVEEHDLLRPENSEPEPEPDIA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgacggcgaccgtgcaggacgcagccgacacgaccggaccgcgtgacatccgggccgag
ctacgggcggccgcgcgccgcgtgttcggctgggaggaactgcgtcccggccagctcgac
gcgatggaaccgctggtgcggggccgggacgtgctcgcggtgatggccaccggatcgggc
aagtcggcgatctaccaggtgccggcgttgctgatcgagggcacgaccctggtgatctcc
ccgctcatcgcgctacagaacgatcagatcgcaggtctcgacgccacctcggcgccggac
gcggtcgcgatcaattcccggcagcgggcctcggcgaccgcggccgcgtgggagacgatc
cgggagcgcaccgtggagtacgtcttcctggcgccggagcagctcgccaacgacgaggtg
gtggcccgtctcgccgacgcgcacgtctctctcgtggtggtcgacgaggcgcactgtgtg
tccgcgtggggccacgacttccggcccgactacctgcgcctggcggacgcgctcgaccgg
ctcggccggccgccggtggtggcgctcacggccaccgcatcgccgccggtgcggcaggag
atcgtcgaggagctgcgcctgcgcgacccggtggtgatcgccagcggattcgatcggccc
aacatcgatctggccgtcgagcggtacacgaccgacgccgagaaacgccgggcggtgatc
gagacggtcgccggactcgagacgcccgggctgctgtacaccgcgacgcgcaaggacgcc
gagttctatgcggccgaactggccgaacgggggcggcgggcggccgcgtaccacgccggc
ctgccgtcggccacgcgcgagcgggtacaccacgggttcctcgacggcgagtacgaggtg
gtggtggcgacctccgcgttcggcatgggcatcgacaagcccgacgtgcggttcgtcgcg
cacgcctccgcgccggattccgtggacagctactaccagcagatcggccgggccgggcgc
gacgggctcgaggcgaaggcgctgctgttctaccggcccgaggacctctcgctcgcgaag
ttcttcacgacccaccgcccggacgaggaactgctcggccgggcgttcaccgcgctgcgg
cggacgaaggccccgacgcgactgaaagacctacgcgccgaactggatacccgcggccgg
accctgaccaacgcggtcaacctgctcgaacgggccggggtggtctcctcgggacgcaaa
gggttcaccgcacgcaccgtcgaggtggagatcgccgtccggcgcgcggcggaggtggca
gcggtgggcgaacggatggaccgctcccgcgtggagatgatgcgcggctacgccgaaacc
cgcggctgccgaaggcagttcctgctcgggtacttcggcgagtcgctgctcgaaccgtgc
ggccactgcgactgctgccgcgaggggatccccgagagccggcccgagccggcgaatcat
gttcgtcacgaatcgattccgctacacacccgggtcgtgcacgcgcagtggggcgccggc
gaggtgatgagcgcggagacggaccggatcaccgtgctgttcgacggatacggctaccgc
accctctcgctcgaggcggtcgaggagcacgacctgctgcgccccgagaactcggagccc
gagccggagcccgacatcgcctga
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