Rhodococcus sp. 11-3: KZJ41_13180
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Entry
KZJ41_13180 CDS
T10209
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhou Rhodococcus sp. 11-3
Brite
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KZJ41_13180 (hrpA)
Messenger RNA biogenesis [BR:
rhou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KZJ41_13180 (hrpA)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
USC17732
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Position
complement(2778057..2781977)
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AA seq
1306 aa
AA seq
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MSTSPETPRSPAPPGATRRDLKAGLTEVSLRDEHRIRRRLDRARGPEALAKIADEIEQAR
LRLAARAAGVPTVTYPDNLPVSQRRDDIAAAIRDHQVVIVAGETGSGKTTQIPKICLELG
RGVRGLIGHTQPRRIAARAVAERIAEELDSELGDTVGYTVRFTDRVSDSTLIKLMTDGIL
LAEIQRDRLLRRYDTLVIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFA
NHFAAADGTPAPIVEVSGRTYPVEIRYRPLTVEVGDALVDRDPVDAVCEAVEELCAEGDG
DILVFLSGEREIRDTADALRDRKLRGTEILPLYARLSAAEQHRVFTPHTGRRVVLSTNVA
ETSLTVPGIRYVVDPGTARISRYSVRTKVQRLPIEEISQASARQRSGRCGRVADGICIRL
YSEEDFEARPEFTEPEILRTNLASVVLQMTALGLGDLASFPFVEAPDPRAVRDGVALLEE
LGALEPPSKDEPPKLTGTGRELALLPVDPRMARMIVEGHRNGCLREVLIIVAALSIQDVR
ERPAEFQQAADEKHARFAVEGSDFLAYLKLWDYLKEQRKELSSSRFRKMCRDEFLHWLRI
REWQDLQGQLRQITLNLGWETRHQDVGHDAIHQSLLAGLLSHVGVREGEKRDFLGARGTR
FAIFPGSSLSKKPPRWVMAAELVETSRLWARVTARIEPEWAEKLAPHLVKRTYSEPHWST
RREAAMAYERVTLYGIPLVAQRPVQYGPIDREASRELFIRHALVQGEWRTRHRFFHANRE
LLEDVEALEHRARRRDILVDDETLFEFYDQRVGPEVVSARHFDAWWKKERQKNPDLLTFT
PETVVNQEAPTVLGGDYPDAWRQGDLQFPLTYQFEPGTEEDGVTVRIPVALLAGVRPVGF
DWSVPGMRVELVTALIKTLPKHLRRQVVPAPDFAAAALASVQPRSEPLVNAMARELSRLG
AARIEPSDFDPTALPDHLRMTFAAVDERGAVLARSKSLTALRRQLANRVEAEVSRAASST
ERAPALVWTAETLGTLEPTVTRTVAGQQVTGYPTLVAEDGGVAVRVLSTPHAQQAAMRTG
LRALLLEAVPMQARAATSGLSNGERLALGRNPDGSFEDLLEDCRACAVDELIARHGKPVR
TPDEFTALAKVVRAQLPGRVAALLKLVVPALARAHEVEVLLERVRGEAAEDVREQLTSLL
FRGFVAELGSARLADLPRYLAAAAHRLESLPASALRDRQGMDVLDRVYAEYDRLLARLPE
ERATAADVVEVSWMMEELRVSLFAQHLGTRGPISETRILKAVAAIR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctcacccgagaccccgcgctcccccgccccgcccggggcgacccgtcgcgac
ctgaaggcaggcctcaccgaggtatcgctgcgcgatgagcaccgcatccgccggcggctc
gaccgcgcccgcggacccgaggcgctggcgaagatcgccgacgagatcgagcaggcgcgg
ttgcggctcgcggcgcgggcggccggcgtgccgacggtcacctaccccgacaacctcccg
gtctcgcagcgcagggacgacatcgccgccgcgatccgcgaccaccaggtggtgatcgtc
gccggcgagaccggctccggcaagaccacgcagatcccgaagatctgcctcgaactcggc
cgcggcgtccgcggcctgatcgggcacacgcagccgcgccgcatcgcggcccgggcggtc
gccgagcgcatcgccgaggaactcgactccgaactcggcgacaccgtcggctacaccgtc
cggttcaccgaccgggtgtcggactcgacgctgatcaagctgatgaccgacggcatcctc
ctcgccgagatccagcgcgatcggctgctgcgccgttacgacaccctcgtcatcgacgag
gcccacgaacgcagcctcaacatcgacttcatcctcggctacctcaaggaactgctgccc
cggcggccggacctgaaggtgatcatcacctcggcgaccatcgacccggaacggttcgcg
aaccacttcgcagcggccgacggcacgcccgcgcccatcgtcgaggtctccggccgcacc
tatccggtcgagatccggtaccgtcccctgacggtcgaggtgggcgacgcgctcgtcgac
cgcgacccggtggatgccgtctgtgaggcggtcgaggaactctgcgccgagggagacggg
gacatcctcgtgttcctctccggtgaacgcgagatccgcgacaccgccgacgcgctgcgc
gaccgcaagctacggggcaccgagatcctgccgctgtacgcgcggctgtccgccgccgag
cagcaccgggtgttcaccccacacaccggccggcgagtggtgctgtccaccaacgtcgcc
gaaacctcgctcaccgtgcccggtatccgctacgtcgtcgaccccggcaccgcgcggatc
tcccgctactcggtgcgcaccaaggtccagcgactgcccatcgaggagatctcgcaggcc
tccgcccggcagcggtccggccgctgcggccgcgtcgccgacggcatctgtatccggctg
tactccgaggaggacttcgaggcccgccccgagttcaccgaaccggagatcctgcgcacc
aacctcgcctcggtcgtgctgcagatgacggcgctcgggctcggcgacctcgcctcgttc
ccattcgtcgaggcccccgacccgcgggccgtccgcgacggtgtcgcgctgctcgaggaa
ctcggtgcgctcgaaccgccgtcgaaggacgaaccaccgaaactgaccggcaccggacgc
gaactcgcgctgttgccggtcgatccgcgcatggcgcggatgatcgtggagggtcaccgc
aacgggtgcctgcgcgaggtcctgatcatcgttgcggcgctgtcgatccaggacgtgcgc
gaacggccggccgagttccagcaggcggcggacgagaagcacgcccggttcgccgtcgag
ggctcggacttccttgcgtacctgaagctgtgggactacctgaaggagcaacggaaggaa
ctgtcgtccagccggttccgcaagatgtgccgcgacgagttcctgcactggctgcggatc
cgggaatggcaggatctgcagggccagctgcgccagatcaccctcaacctcgggtgggag
acgcggcatcaggacgtcggccacgacgcgatccaccagtcgctgctggccgggctgctc
tcgcacgtcggcgtgcgtgagggcgagaagcgggacttcctcggcgcgcgcgggacccgg
ttcgcgatcttccccggctcgtcgctgtccaagaagccgccgcgctgggtgatggccgcc
gagctggtcgagacgtcgcggctgtgggctcgggtcaccgcgcggatcgaacccgaatgg
gccgagaagctcgccccgcacctggtcaagcgcacctactccgaaccgcactggtccacc
aggcgcgaggccgccatggcctacgagcgggtcacgctctacggcattcccctggtcgcg
caacggcccgtgcagtacggcccgatcgaccgcgaggcctcacgcgagctgttcatccgg
catgccctcgtccagggcgaatggcggacgcgccacaggttcttccacgccaaccgtgag
ttgctcgaggacgtggaggcgctcgagcaccgggcccgcaggcgcgacatcctcgtcgac
gacgagaccctgttcgagttctacgaccagcgcgtcggaccggaggtcgtctcggcgcgg
cacttcgacgcgtggtggaagaaggagcggcagaagaatcccgacctgttgaccttcacc
ccggaaacggtggtcaaccaggaggcgcccaccgtcctcggcggcgactaccccgacgcg
tggcggcagggcgatctgcagttccccctcacctaccagttcgagcccggcaccgaggag
gacggcgtcaccgtccgcattcccgtcgcgctgctggccggggtccggccggtcggcttc
gactggtcggtacccggtatgcgggtcgagctggtcaccgccctgatcaagacgcttccc
aagcatcttcgccgccaagtcgttccggcaccggacttcgctgcggcagccctcgcgtcc
gtgcagccgcgctccgagccgctcgtcaacgcgatggcgcgggagctgtcgcggctcggc
gcggcgcggatcgagccgagcgacttcgacccgaccgccctgccggaccacctgcggatg
acgttcgcggccgtcgacgaacgcggcgccgtactcgcgcgcagcaagagcctgaccgcg
ctgcgcaggcagctggcgaaccgtgtcgaggccgaggtctcccgggcggcgtcgagcacc
gagcgcgcgccggcactggtatggacagccgagacgctcggcaccctcgagcccacggtc
acacgcaccgtcgccggccagcaggtgaccggatatccgacgctggtcgccgaggatggt
ggcgtggccgtgcgggtgctcagcaccccgcacgcgcagcaggccgcgatgcgcaccggg
ctgcgggctctgctgctcgaggcggtcccgatgcaggcgcgcgccgcgacgtcgggcctg
agcaacggcgaacggctggcgctcggccgcaatccggacggctcgttcgaggatctgctc
gaggactgccgggcgtgcgccgtggacgagctgatcgcccggcacggcaagccggtgcgc
acaccggacgagttcaccgcgctggcgaaggtggtgcgggcccagctgccgggccgggtg
gcggcgctgctgaagctcgtcgtccccgccctggccagggcacacgaggtggaggtgctg
ctcgaacgggtgcgcggcgaggccgccgaggacgtgcgtgaacagctgacctcgctgctg
ttccggggtttcgtcgccgaactcggcagtgcccggctggccgacctgccccgctacctg
gcggcggcggcacaccggctcgaatcgctgccggcgagcgcgcttcgcgaccggcagggc
atggacgtgctggaccgggtctacgccgagtacgaccgactgctcgcccggctgccggag
gagcgggccacggctgccgacgtggtggaggtctcgtggatgatggaggagttgcgggtc
agcctgttcgcgcagcacctcggcacccgcgggccgatctcggagacgcgaatcctcaag
gccgtcgcggcgattcgctga
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