Rhodococcus sp. 11-3: KZJ41_17990
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Entry
KZJ41_17990 CDS
T10209
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03420
Nucleotide excision repair
rhou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KZJ41_17990
03430 Mismatch repair
KZJ41_17990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_17990
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZJ41_17990
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZJ41_17990
MMR (mismatch excision repair)
Other MMR factors
KZJ41_17990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USC13574
LinkDB
All DBs
Position
complement(3865656..3867800)
Genome browser
AA seq
714 aa
AA seq
DB search
MMEPMRADASVEGLDPQQAAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVSHGHVAAGQ
VLAVTFTARAAGEMRGRLRELGVGGSGPQVQARTFHAAALRQLRYFWPRVVGDTPWQLLD
RKFAVVSQAAHRAGFATDTDTVRDLLSEIEWAKGSLVAPEDYPAAVARARREPPADAGRV
AAVYAGYESLKVRDDGIFLDFDDLLLHTAAALEEHTAVAEEFRDRYRCFVVDEYQDVTPL
QQRVLDAWLGDRDDLTVVGDANQTIYSFTGATPQYLLDFSRRFPDATVVRLERDYRSTPQ
VVSLANRVIGAARGRIAGTRLQLVGQRPPGPEPAFAEYDDEPAEAQAVAKSIAKLLGSGV
PAAEIAVLYRINAQSEAYEQAFTEAGIPYQVRGGEGFFTRAEVRQAVGALRQAHGRDDLP
AGADRGAALVTLVRAVLAPLGLTEAEPAGAQARERWESLRALVQLTEELLGHEPDLDLDG
LLRDLAARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIVHVVGDSSTPPD
EAGIEEERRLLYVGVTRARVHLQLSWALSRTEGGRRSRRRSRFLHGLIPDDSPASRIAAP
ASPKRKRPQCRVCGKPLMGSSATMLGRCEGCPSDLDESLLMALKDWRRERSKEMKVPAYV
VFSDNTLIAIAEQRPGDDRALVAIPGIGAKKLEQFGADVLAVVRGERAPDTLDL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcccatgcgagcagatgcatcggtggagggcctggatcctcagcaggcggcg
gcggtcctcgcgccgcggggcccggtgtgtgtgctcgccggtgccgggacgggaaagacc
cggaccatcacccgccgcatcgcgcacctggtgtcccacggacacgtcgcggccggccag
gtcctcgccgtcacgttcaccgcccgcgccgccggggagatgcgcggccggctgcgcgaa
ctcggggtgggcggctcggggccgcaggtgcaggcgcgtaccttccacgccgccgcgctg
cggcagctgcgctacttctggccgcgagtggtcggcgacacgccgtggcagctgctcgac
cgcaagttcgccgtcgtctcccaggccgcgcaccgtgccgggttcgccaccgacaccgac
accgtgcgcgacctgctctcggagatcgagtgggccaagggttcgctcgtcgcgccggag
gactacccggccgcggtggcccgggcccggcgtgagccccccgccgacgccggacgggtg
gctgccgtctacgccggctacgagtccctcaaggtgcgcgacgacggtatcttcctcgac
ttcgacgacctgctgctgcacacggccgccgcgctcgaggagcacaccgccgtcgccgag
gagttccgcgaccgctaccgctgcttcgtcgtcgacgagtaccaggacgtcacgcccctg
cagcagcgcgtgctcgacgcgtggctcggcgaccgcgacgacctcaccgtcgtcggcgac
gcgaatcagacgatctactcgttcaccggtgccaccccgcagtatctgctcgacttctcc
cgccgattcccggacgccaccgtggtccggctcgaacgcgactaccgttccacgccgcag
gtggtgtccctcgccaaccgggtcatcggtgcggcacgcggccgcatcgccgggacccgc
ctccagctcgtcggccagcgcccgcccggacccgagccggcgttcgccgagtacgacgac
gagcccgccgaggcgcaggccgtggccaagtcgatcgcgaagctgctgggatcgggggtg
cccgccgccgagatcgcggtgctctaccgcatcaatgcccagtcggaggcctacgagcag
gcgttcaccgaggccggtatcccgtatcaggtccgcggcggcgagggcttcttcacccgc
gccgaggtgcgccaggcggtcggcgcgctgcggcaggcccacggccgcgacgacctgccc
gcgggcgccgatcgcggcgccgccctcgtcacgctggtgcgggcggtgctcgccccgctc
ggcctgaccgaggccgagcctgccggtgcgcaggcccgtgaacggtgggaatctctgcgg
gcgctcgtgcagctgaccgaggagctcctcgggcacgagcccgacctggatctcgacggt
ctgctgcgtgacctggcggcgcgggccgaggcgcggcacccgccgacggtgcagggcgtg
acgctcgcgtcgctgcacgcggccaagggcctggaatgggacgcggtcttcctcgtcggc
ctcaccgacgggaccctgcccatcgtgcacgtcgtcggcgacagctccacgccgcccgac
gaggccggcatcgaggaggagcgccgcctgctgtacgtcggggtcacccgcgcccgcgtg
cacctgcaactgtcctgggcgctctcgcgcaccgagggcggccgccggtcgcggcggcgg
tcccggttcctgcacggtctgatccccgacgactcgccggcctcccggatcgcggccccc
gcgtcgccgaaacgtaagcggccgcagtgccgcgtgtgcggaaagcctctgatggggtcg
tccgcgaccatgctcgggcgctgcgagggctgcccgtcggacctggacgaatcgctgctg
atggcgctgaaggactggcgccgggaacgttccaaggagatgaaggtccccgcctacgtg
gtgttcagcgacaacacgctcatcgcgatcgctgagcagcggccgggcgacgaccgtgcc
ctcgtcgccatccccggcatcggggcgaagaaactcgagcagttcggcgcggacgtgctc
gccgtcgtgcgcggtgaacgcgcgcccgataccctcgatctgtag
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