Rhodococcus sp. 11-3: KZJ41_18025
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Entry
KZJ41_18025 CDS
T10209
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03420
Nucleotide excision repair
rhou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KZJ41_18025
03430 Mismatch repair
KZJ41_18025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_18025
Enzymes [BR:
rhou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZJ41_18025
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZJ41_18025
MMR (mismatch excision repair)
Other MMR factors
KZJ41_18025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USC13580
LinkDB
All DBs
Position
complement(3872256..3875621)
Genome browser
AA seq
1121 aa
AA seq
DB search
MAPPTVSAVELAAALGQFPPTGEQAAVIEAPLQPTLVVAGAGAGKTETMAARVVWLVANG
FVDPEQVLGLTFTRKAAQQLTTRIRRRLAKLAGSALVRDLDPTGGLRARILAGEPEVGTY
HAYAGRLLGEHGLLLPIEPSATLLSETELWQLAYRVVSAWDGDLDTDRNPASVTECVLAL
SGQLAEHLVEPEDLRVAHTELDKLVHTLPAGPNQRGGPSKTLLNILDAQQARIELLPLVE
RLAQTLRREGALDFGSQMSLAARMARDHPEVGRAERARFRVVLLDEYQDTGHAQRVLLSS
LFGGPLSGGASERMPAVTAVGDPMQSIYGWRGASAANLPRFSTDFPLPDGSPAPRLELLT
SWRNPPEALELANLASEPLRHKGVQVSTLRAKPEPTPGDVRLALHPDVEAEREWVAGRIA
AEYAAARAAEASPPTAAVLVRRNADAAPIAEALRAHGLPVEVVGLGGLLHTPEVADVIAM
LRLAADPTAGSAAVRVLTGARWQLGAADLKALWRRAGELAIGGRFGVAGTVTDSAALAEA
LDSALPGEQSEQAGIADALSDPGPPHRYSEFGYARIVALGKELASLRERLGQPLTELVAE
VERVLGIGIEAQARAGSDGGVGRENLDAFADVVAGYASRGSATLTGLLAYLSAAEAIEGG
LAPGEVQVATERVQVLTVHSAKGLEWEVVAVPHLTAGVFPSSTAGSTWLGALGELPPSLR
GDRALPGENSDGVPVLDLDEVYDRKSLENCIDTHKDALKRRKLDEDRRLFYVALTRTERA
LFVSGHHWAESGTDPKGPSPFLSELHELVAARPGLGRIETWAPAPEPGTENPMTADPHTA
VWPRDPLGVRRPFVEQGAALVLAMLEEPEPEPPATPDDDPDDWAADVDALLAERARRAEQ
RAEVMLPAQMSVSQLVDLAADPAALAARLRRPLPFRPNPLARRGTAFHAWLERRYGATRL
LDLDELPGADDAGGDETELDRLQEAFLRSRWAQRSPVEVEVPFETSLAGVVIRGRIDAVF
EDSDGGWTVIDWKTGAEPDEDRLEAVAMQLAAYRLAWAQLMAARTFRATGRPAVPPLDKV
RAAFHYVRTGRTIAPEDLPGAERLDRLVRSAGADRPSAGER
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
gtggcaccaccgacggtgagtgcggtcgagctggccgccgcgctcgggcagttcccgccg
accggcgagcaggccgcggtgatcgaggcgccgctgcagcccacgctcgtcgtcgccggc
gccggcgccggcaagaccgagacgatggcggcgcgcgtggtctggctcgtcgcgaacggc
ttcgtcgacccggaacaggtgctgggcctgacgttcacccgcaaggccgcccagcagctc
accacccggatccgccggcggctggcgaagctcgccggatcggcgctggtgcgcgacctc
gacccgaccggcgggctgcgcgcccgcatcctcgccggcgagccggaggtgggcacctat
cacgcgtacgccgggcgcctgctcggtgagcacgggctgctgctgcccatcgaaccgtcg
gcgaccctgctgtccgagaccgagctgtggcagctcgcgtaccgcgtggtcagcgcctgg
gacggcgacctcgacaccgaccgcaatcccgcgtcggtcaccgagtgcgtgctggccctg
tcggggcagctcgccgagcacctcgtcgagccggaggacctgcgcgtcgcgcacaccgag
ctggacaagctcgtgcacacgctgcccgccggcccgaatcagcgtgggggaccgtcgaag
accctgctgaacatcctcgacgcgcagcaggcccggatcgagttgctgcccctggtcgag
cgcttggcgcagacgctgcgccgcgagggcgcgctggatttcggcagccagatgtcgctc
gccgcccggatggcccgcgaccacccggaggtcggccgcgccgagcgggcccgcttccgg
gtggtgctgctcgacgagtaccaggacaccggccacgcgcagcgtgtcctcctgtcgtcg
ctgttcggcggtcccctgtccggcggcgcctcggagcggatgcccgcggtgaccgcggtg
ggggatccgatgcagtcgatctacggatggcgtggcgcgtccgcggcaaacctgccccgg
ttctcgacggacttcccgctgccggacggcagccccgcgccccggctcgagttgctcacc
agctggcgcaaccccccagaggcgctggagctggcaaatctggcatcggaaccgttgcgg
cacaagggtgtccaggtcagcacgctgcgggcgaagccggagccgacccccggcgacgtc
cggctcgccctgcatccggacgtggaggccgaacgggaatgggtggccgggcggatcgcc
gccgagtacgcggccgcccgggccgccgaggcgtcgccgccgacagcggcggtgctggtg
cgccgcaacgccgacgccgcgccgatcgcggaggcgctgcgagcccacggcctgcccgtc
gaggtggtcggtctcggcggcctgctgcacacccccgaggtggcggacgtgatcgcgatg
ctgcggctggccgcggaccccacggccggcagcgcggccgtgcgggtgctgaccggtgcc
cgctggcagctcggcgccgccgacctgaaggcgctgtggcgccgggccggcgaactcgcc
atcggcggccgcttcggcgtcgccggcacggtcaccgactcggccgccctcgccgaggcg
ctcgacagcgccctgccgggcgagcagtccgaacaggccgggatcgccgacgcactctcc
gatcccggtccgccgcatcggtattcggagttcggttacgcgcgcatcgtcgcgctgggc
aaggagctggcgtccctgcgggagcggctgggccagccgctgacggagctcgtcgccgag
gtggagcgggttctcggcatcggcatcgaggcgcaggcccgcgcgggcagcgacggcggt
gtcggccgggagaacctcgacgccttcgcggacgtggtcgccgggtacgcgagccgcggt
tcggcgacgctgaccggcctgctcgcctacctctccgccgccgaggcgatcgagggcgga
ctcgctccgggcgaggtgcaggtcgccaccgaacgggtgcaggtgctgaccgtgcactcg
gccaagggcctcgaatgggaggtggtggcggtcccgcacctgaccgccggggtgttcccc
tcgtcgacggccggcagcacatggctcggcgccctcggggaactgccgccgtcgctgcgc
ggcgaccgggcgctgccgggcgagaacagcgacggcgtccccgtcctcgatctcgacgag
gtctacgaccgcaaatcgctcgagaactgcatcgacacgcacaaggacgccctcaagcgc
cggaaactggacgaggaccggcgcctgttctacgtcgcgctcacccgcacggagcgggcc
ctgttcgtctccgggcaccactgggccgagtccggaacggacccgaagggaccgtccccg
ttcctgtccgaactgcacgagctggtggcggcgcgacccgggctcggccgcatcgagacc
tgggccccggcgccggagccgggcaccgagaacccgatgaccgcggatccgcacaccgcc
gtgtggccgcgcgatcccctcggggtgcggcgtcccttcgtcgagcagggcgcggccctg
gtcctcgcgatgctcgaggagcccgaacccgagcccccggcgaccccggacgacgacccc
gacgactgggccgcggacgtcgacgcgctgctcgccgagcgggcccggcgcgccgagcag
cgtgccgaggtgatgctgcccgcccagatgtcggtcagccagctggtggatctggccgcg
gacccggccgcgctggcggcgcggctgcgccgtccgttgccgttccggccgaatccgctg
gcgcgccgcggcaccgccttccacgcgtggctcgaacggcgatacggcgccacgcggctg
ctcgacctcgacgaactgcccggcgcggacgacgccggcggcgacgagaccgaactcgac
cggctccaggaggcgttcctgcgctcgcggtgggcgcagcgcagcccggtggaggtggag
gttccgttcgagacgtcgctggccggggtggtgatccgtggccggatcgacgcggtgttc
gaggactcggacggcggctggacggtcatcgactggaagaccggcgccgagcccgacgag
gaccggctcgaggcggtggcgatgcagctggccgcgtaccgactggcctgggcgcagctg
atggccgcccgcacgttccgcgcgacgggccgaccggccgtgccgcctctcgacaaggtg
cgggccgcattccactacgtgcgcaccgggcggaccatcgcgccggaggacctgcccggc
gccgagcggctggaccggttggtgcgcagcgccggcgcggaccgcccgtcggccggcgag
cggtag
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