Rhodovulum sp. HP10: ACK8CO_02495
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Entry
ACK8CO_02495 CDS
T11157
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhov Rhodovulum sp. HP10
Pathway
rhov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACK8CO_02495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhov03019
]
ACK8CO_02495
03009 Ribosome biogenesis [BR:
rhov03009
]
ACK8CO_02495
Enzymes [BR:
rhov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACK8CO_02495
Messenger RNA biogenesis [BR:
rhov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACK8CO_02495
Ribosome biogenesis [BR:
rhov03009
]
Prokaryotic type
rRNA processing factors
ACK8CO_02495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XOE42255
LinkDB
All DBs
Position
complement(562436..565348)
Genome browser
AA seq
970 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVDEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERALAEEMEDDEGESDKPKRRSRSRRKP
RADKPASAAPETASGEDGAGEDGTESDAGEAEDREQDAAAAADVPAAEDESRPAEAAAEA
EAEDAGPASDSEEDEDGKDNDPPPSVMAMAAHSDDPVESREPSGGIPGMDVVDLGDDEDG
EEPVEAEDTAETRKSSSRRRRRSPRRKTDEADDAPASVSDEAEEDGPEEVHHDDQIESVA
EEDVHEEIRPRKPRARRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLM
PNTARGGGISRKITNAVDRKKLKEIASELDVPEGAGLIIRTAGAKRTKSEIRRDYEYLQR
LWEQIRELTLKSVAPAPIYEEGNLIKRSIRDLYSREIDEVLVEGEGGYRLAKDFMKMIMP
SHAKNVKNYTDPMPLFARYQVESYLSSMFNPVVQLKSGGYLVIGVTEALVAIDVNSGRAT
KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRIKDKLKTD
RARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPHCHGTGLIRSDDNLALSILRQIEEE
GVRGRSREVLLKAPIGIVNFLMNQKREHVAQIEARYGLSVRIEADPFLISPDFSIERFKT
ATRAVPEVVTPVVSLDMSDMPDPVEEEDEHEEETPVVAAAPVPAPEGEDKPGKKRRRRRR
KKKTPQGGEDQGVEAGQDESDDADSDGDTDAEAPEAVTAEAANEAASAEEKPAEEKPRRS
RRSRSRGRKTERPEAGAEARAEEAVAPKAEEPAAVEAQVPAEAAAPVEAPVVEEAAVEEA
EASPETVELPEAELAAEAPVAEAAVEAEEKAAPEAEPTLRPETQPEPEPKTAEASKDSAP
KRQGWWSVGR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcatcgacgccacccacgcggaggaaacccgcgtggtcgtggtg
gacggaaacaaggttgacgagttcgatttcgagaccgtcaacaaacgccagcttgctggc
aatatctacctagcaaaggtcacgcgggtcgagccttccttgcaggcggccttcgtcgat
tatggcggcaaccgccatggtttcctcgccttctcggaaatccatcccgactattaccag
atcccggtcgccgaccgcgaggcgcttctggccgaggagcgtgccctggccgaagagatg
gaggacgatgagggcgaaagcgacaagcccaagcgtcgcagccgctcgcgccggaagccg
cgcgcggacaagcccgcttctgccgcgccggagactgcgtccggggaagacggggccggg
gaagacgggaccgagagtgacgccggagaggcggaggaccgcgaacaggatgccgcggcc
gccgctgacgttccggccgcggaagacgagagccggccggccgaagctgctgcggaagcc
gaggccgaggatgccggccccgccagcgattccgaggaggatgaggacgggaaggacaac
gacccgcctccctcggtcatggccatggccgcgcatagcgacgatccggtcgagagccgc
gagccgagcggtggcatccccggcatggatgtcgtcgacctgggcgatgacgaggacggc
gaggagccggtcgaggcggaggacaccgccgagacccgcaagtcctcctcgcgccgccgc
cgtcgcagcccgcgcaggaagaccgacgaggccgatgacgccccggcgtccgtctctgat
gaggccgaggaagacggccccgaagaggtccaccatgacgaccagatcgagtcggtcgcc
gaggaggacgtgcatgaagagatccgcccgcgcaaaccgcgtgcgcgtcgttacaagatc
caggaagtggtcaaggtccggcagatcatgctggtccaggtcgtcaaggaagagcgcggc
aacaagggcgcggcgctcaccacctatctttcgctggccgggcgctactgcgtgctcatg
cccaatacggcgcgcggcggcggtatcagccgcaagatcaccaatgcggtcgaccgcaag
aagctgaaggaaatcgcctccgagctcgacgtgccggaaggcgcgggcctgatcatccgg
accgcgggcgccaagcgcaccaagtccgagatccgtcgcgactacgaatatctgcaacgg
ctctgggaacagatccgcgaactgacgctgaaatccgtcgcgcccgccccgatctacgag
gaaggcaatctgatcaagcgctcgatccgcgacctctacagccgcgagatcgacgaggtt
ctggtggaaggcgagggcggttaccgcctggccaaggacttcatgaagatgatcatgccg
tcccatgccaagaacgttaagaattacaccgatccgatgccgcttttcgcgcgctatcag
gtcgagagctatctcagctcgatgttcaatccggtggtgcagctgaaatccggcggctac
ctggtgatcggcgtgaccgaggcgctggtggcgatcgacgtgaactctggccgggccacc
aaggaaggctcgatcgaggaaaccgcgctgaagaccaacctcgaagccgccgaggaggtg
gcgcgccagctgcgtctgcgcgacctcgcgggtctgatcgtgatcgacttcatcgacatg
gaagagcgcaagaacaacgctgccgtcgagaagcgcatcaaggacaagctcaagaccgac
cgcgcccggatccaggtcggccggatctcgggcttcggtctcctggagatgtcgcgccag
cgtctgcgcccgggcatgatcgaggccacgacccagccctgtccgcattgccacggcacc
gggctgatccgctcggatgacaatctggcgctgtcgatcctgcgccagatcgaggaagag
ggggtgcgcggccgctcgcgcgaggtgctcttgaaggcgcccatcggcatcgtcaacttc
ctgatgaaccagaagcgcgagcatgtggcccagatcgaggcccgctatggcctgtccgtc
cggatcgaggccgatcccttcctgatctcgccagatttctcgatcgagcgcttcaagacc
gccacccgtgcggtgcccgaggtcgtgaccccggtggtctctctcgacatgtcggacatg
cccgacccggtcgaggaggaggacgagcacgaggaagagacgccggttgtcgccgcggcc
cccgtgcccgcgcccgagggcgaggacaagcctggcaagaagcgccgtcgccgccgccgg
aagaagaaaaccccgcagggcggtgaggatcagggcgtcgaggccggtcaggacgagtcc
gacgacgcggatagcgatggcgataccgacgcggaggcgcccgaggcggtgacggcagag
gctgccaacgaggccgcttcggctgaagaaaagcccgcggaagagaaaccccggcgctcg
cgccgcagccggtcgcgcggtcgcaagactgagcgtcccgaagccggggccgaagctcgg
gccgaggaggctgtcgcgccgaaagccgaggaacctgcagcggtcgaagcccaagttcct
gcagaggcggcggccccggtagaggcccccgtggtcgaagaagccgctgtggaagaagcc
gaggcctcgcccgaaacggtcgaactgcccgaggccgaactggccgcggaggcgccggtc
gccgaggctgctgtcgaggccgaggaaaaggcggcccccgaggcggagcccacgctgagg
cctgaaacgcagcctgaaccggagcccaaaaccgccgaggcgtcgaaagacagcgcgccc
aagcggcagggatggtggtcggtcggccgctga
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