Rhodovulum sp. HP10: ACK8CO_06420
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Entry
ACK8CO_06420 CDS
T11157
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhov Rhodovulum sp. HP10
Pathway
rhov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACK8CO_06420 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhov03019
]
ACK8CO_06420 (rnr)
03016 Transfer RNA biogenesis [BR:
rhov03016
]
ACK8CO_06420 (rnr)
Enzymes [BR:
rhov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACK8CO_06420 (rnr)
Messenger RNA biogenesis [BR:
rhov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACK8CO_06420 (rnr)
Transfer RNA biogenesis [BR:
rhov03016
]
Prokaryotic type
tRNA degradation factors
ACK8CO_06420 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XOE42989
LinkDB
All DBs
Position
complement(1391513..1393768)
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AA seq
751 aa
AA seq
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MTRIPAKTEILDWIAAHPGQTSKRDIAKAFGLKGADRIDLKRLLKELEDEGHLEKRKRSY
RDPDRLPPVTVLQILAPNADGDLFARPLEWHGEGAAPKVLYLPRQSDAALGEGDRILAKL
QEVRAEDHQYEARLIRKIGANPKRILGIFRKATEGGRIVPIDKGADKEWTVAASLTHGAK
DGELVEAELAGPRGRMGLPRARIVERLGDPTAPKAVSLIAIHQHGIPDDFPDEVIAEADR
AKPAGLGTREDLRSLPLVTIDPADARDRDDAVLAMPDDDPANPGGYILWVAIADVAHYVT
PGSRLDREARRRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACMAVRMKIDASGHKLS
HRFTRGLMQSAGAFAYEEVQAAEDGTPSERIAPLLEEVIHPLYAAYRALIRAREARQPLD
LDLPERRIELSDEGKVASVKFRDRLDAHRLIEEFMVLANVAAAEELTRLQRPLLFRVHEE
PSPEKLDALREVAGASGFTLAKGQVLHTRQLNDLLDQAMGTEFSELINLSTLRSMTQAYY
FPENFGHFGLALKSYAHFTSPIRRYADLIVHRALISAHGWGRDGLSPEDVDELEATAKHI
SETERRSMAAERDTTDRYLAAYLSERVGNEFGGRISGIARFGAFVSLDETGADGLIPIRE
LGREYFHHDRDAQTLMGADTGLVIGIGQRVTVRLAEAVPVTGGLTFELLSIEDRAVPRGP
GRGRGKPVRRKVARSKAKSDKVRRKVKRTRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatccccgccaagaccgagatcctcgactggatcgccgcccatcccggccag
acctccaagcgcgacatcgccaaggcgttcgggctgaagggggctgaccgcatcgacctc
aagcgcctgctgaaggagctcgaggacgagggccatctggaaaagcgcaagcgcagctat
cgcgaccccgaccggctgccgccggtgacagtgctgcaaatcctcgcgcccaatgccgat
ggcgatctttttgcccggccgctggaatggcatggcgagggtgcggcgccgaaggtgctg
tacctgccccggcaaagcgatgcggcgctgggcgagggcgaccggatcctggccaagctg
caggaggtccgcgccgaggatcaccaatacgaggcgcggctgatccgcaagatcggcgcg
aacccgaaacgcatcctggggatcttccgcaaggccaccgagggcgggcggatcgtccca
atcgacaagggcgccgacaaggaatggacggtcgcggccagcctgacccatggcgcgaag
gatggcgaactggtcgaggccgaactggcggggccgcgcggccggatggggctgcccagg
gcccgcatcgtcgagcggctgggcgatccgaccgcgccgaaggcggtcagcctgatcgcc
attcatcagcatgggatccccgacgacttccccgacgaggtgatcgccgaggccgaccgc
gccaagcccgccgggctgggcacccgcgaggatctgcgctcgctgcctctggtcaccatc
gacccggcggatgcgcgcgaccgcgacgatgcggtgctggcgatgcccgatgacgatccg
gcgaatccgggcgggtatatcctttgggtcgccatcgccgatgtggcccattacgtgacc
ccgggctcgcggctcgaccgcgaggcgcggcggcggggcaattcctcttacttccccgac
cgggtcgtgccgatgctgcccgaccggctgtcgggcgatctgtgttcgctgcatgagggc
gtgccgcgcgcctgcatggcggtccggatgaagatcgacgcctcgggccacaagctgtcg
caccggttcacccgcgggctgatgcaatcggccggtgccttcgcctatgaggaggtgcag
gcggccgaggatggcacgccctcggagcgcatcgcgcccttgctcgaggaggtgatccac
ccgctttacgccgcctatcgcgcgctgatccgggcccgcgaggcgcgccagccgctggat
ctagacctgcccgagcgccggatcgaactgtccgacgagggcaaggtggcctcggtgaag
ttccgcgaccggctggatgcgcaccggctgatcgaggaattcatggtgctggccaatgtc
gccgccgccgaggaactcacccggctgcaacgcccgcttctgttccgggtccatgaagag
ccgagccccgaaaagctcgatgcgctgcgcgaggtggcgggcgcctcgggcttcacgctg
gccaaggggcaggtgctgcatacccgccagctgaacgacctgcttgatcaggcgatgggg
accgagttttccgagctgatcaacctctcgacgctgcgctcgatgacccaggcctattac
ttccccgagaatttcggccatttcggtctggcgctgaaatcctatgcccatttcacctcg
ccgatccggcgctatgccgatctgatcgtgcaccgggcgctgatctcggcgcatggctgg
ggccgggacgggctcagccccgaggatgtcgacgagctcgaggccactgccaagcatatc
agcgagaccgagcggcgctcgatggcggccgaacgcgacaccaccgatcgctatcttgcc
gcctatctctccgagcgggtgggcaacgaattcggcggccggatctcggggatcgcgcgg
ttcggcgccttcgtctcgcttgacgagacaggggcggacgggcttatcccgatccgcgag
ctgggccgggaatatttccaccacgaccgcgatgcccagaccctgatgggcgccgatacc
gggctggtgatcggtatcggccagcgggtgacggtgcgcctcgccgaggcggtgccggtg
actgggggcctgaccttcgagcttctgtcgatcgaggaccgggcggtgccgcgcgggccc
gggcgcggccggggcaagccggtgcggcgcaaggtggcgcggtccaaggcgaaatcggac
aaggtcaggcgcaaggtcaagcggacgcggcgctga
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