Rhodovulum sp. HP10: ACK8CO_11905
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Entry
ACK8CO_11905 CDS
T11157
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rhov Rhodovulum sp. HP10
Brite
KEGG Orthology (KO) [BR:
rhov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhov03032
]
ACK8CO_11905 (gyrB)
03400 DNA repair and recombination proteins [BR:
rhov03400
]
ACK8CO_11905 (gyrB)
Enzymes [BR:
rhov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
ACK8CO_11905 (gyrB)
DNA replication proteins [BR:
rhov03032
]
Prokaryotic type
DNA Topoisomerases
ACK8CO_11905 (gyrB)
DNA repair and recombination proteins [BR:
rhov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACK8CO_11905 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
XOE40399
LinkDB
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Position
complement(2554799..2557216)
Genome browser
AA seq
805 aa
AA seq
DB search
MVDNARAAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG
HADAVTVKIHADSSVSVSDNGRGIPVGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGG
LHGVGVSVVNALSDWLELRIWREGHEHVARFEHGDTTEHLRVVGPSGGRSGTEVRFMAST
ETFSNLDYSFKTLENRLRELAFLNSGVRIVLEDERGAEPQRVELCYEGGVREFVRYIDKL
KTPVMAEPIFMTGERDGIGVEVAMWWNDGYHETVLPFTNNIPQRDGGTHMAGFRGALTRT
INNYAMSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL
VNEKLAEWFEEHPQEARSIVGKIVEAALAREAARKARELTRRKTAMDVASLPGKLADCQE
RDPSKSEIFLVEGDSAGGSAKQGRARANQAVLPLRGKILNVERARFDRMLSSQEIGTLIT
ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPEVIEGGFLYIAQP
PLYKVARGKSEVYLKDQAALEDYLVEMGIDGAVLRLGDGEEIVAKDLARVVEEARHLRRI
LQAFPTHYPAHILEQAAIAGAFRPGQIDADLQGTADAVARRLDLIALEYERGWIGRPTQD
KGMRFSRVVRGVEEVRVLDGQVLRSAEAARLGTFTDKLQEIYQHPARLIRKDRDQPIHAP
SELLQAILSEGEKGLTLQRYKGLGEMNPEQLWETTLDPEARTLLQVRVEDVAEADNIFTK
LMGDVVEPRREFIQQNALSVANLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacaacgcacgggctgccgaagagtacggcgccgattccatcaaggttctcaaa
ggcctggaagcggtccgcaaacggcccggcatgtatatcggcgataccgacgacggctcg
ggcctgcatcacatggtttacgaggtggtcgataacggcatcgacgaggcgcttgcgggc
catgccgacgccgtcaccgtgaaaatccacgccgattcaagcgtctcggtcagcgataac
gggcggggcattccggtcggcatccacgagggagagggtgtctcggcggccgaggtcatc
atgacccagcttcacgccgggggcaaattcgaccagaactcgtacaaggtctcgggcggc
ctgcacggcgtgggcgtttcggtggtgaacgcgctgtcggactggctggagctgcggatc
tggcgcgaggggcatgaacatgtcgcccggttcgaacatggcgataccaccgagcatctg
cgcgtagtcggcccgtccggggggcgcagcggcaccgaggtccgcttcatggcctcgacc
gagaccttctcgaatctcgactattccttcaagacgctcgagaaccggctgcgcgaactg
gccttcctcaattccggcgtgcgcatcgtgctcgaggacgagcgcggggccgagcctcag
cgcgtcgagctgtgctacgagggcggcgtccgcgaattcgtccgctacatcgacaagctg
aaaacgcccgtgatggccgaaccgatcttcatgaccggtgaacgcgacgggatcggtgtc
gaggtcgcgatgtggtggaacgacggctatcacgagaccgtcctgcccttcaccaacaac
attccgcagcgcgacggcggcacccacatggcggggttccgcggggcgctgacccggacc
atcaacaattacgcgatgtcgagcggcatcgccaagcgcgagaaggtgaatttcaccggc
gacgatgcccgcgaagggctgacctgcgtcttgtcggtgaaggtgcccgatccgaaattc
tcgagccagaccaaggacaagcttgtcagctccgaggtgcggcccgcagtcgagagcctg
gtgaacgaaaagcttgccgaatggttcgaggaacatccgcaggaggcccgcagcatcgtc
ggcaagatcgtcgaggcagcgctggcccgcgaggcggcgcgcaaggcccgcgaactgact
cggcgcaagacggcgatggatgtggcctcgcttccgggcaagctcgccgattgccaggaa
cgcgatccctccaagtccgagatcttcctcgtcgagggcgacagcgccggcggctcggcc
aagcagggtcgggcccgggccaatcaggcggttctgccgcttcggggcaagatcctcaac
gtcgagcgtgcccgcttcgaccggatgctgtcgagccaggagatcggaacgctgatcacc
gcactcggcaccggcatcgggcgggacgagttcgacatctcgaagctgcgctaccacaag
atcgtcatcatgaccgacgccgatgtcgacggcgcgcatatccggacgcttctgctgacc
ttcttcttccggcagatgcccgaggtgatcgagggcggcttcctctacatcgcgcagccg
ccgctttacaaggtcgcgcgcggcaagtccgaagtctatctgaaggaccaggccgcgctg
gaggattaccttgtcgagatgggcatcgacggggcggtgctgcggcttggcgatggcgag
gaaatcgtcgccaaggaccttgcccgggtggtcgaggaggcgcgtcatctgcgccgcatc
ctgcaggctttcccgacccattaccctgcccatatcctcgagcaggccgccattgccggg
gcgttccggcccggccagatcgacgccgacctgcagggcaccgccgatgcggtggcccgg
cggctcgacctgatcgcgcttgaatatgaacgcggctggatcggccggccgacccaggac
aagggcatgcgcttttcgcgcgtggtacgcggtgtcgaagaggtgcgggtgctcgacggc
caggtcctgcgttcggccgaggctgcccggctcgggaccttcacggacaagctgcaggaa
atctaccagcacccggccagactgatccgcaaggatcgcgatcagccgatccacgcccct
tccgaactcttgcaggcgatcctgtccgagggcgagaagggcctgacgcttcagcgctac
aaggggctgggcgagatgaaccccgaacagctctgggaaaccacgctcgaccccgaggcg
cggacgcttctgcaggtgcgggtcgaggatgtggccgaggccgacaacatcttcaccaag
ctgatgggcgacgtggtcgagccccggcgtgagttcatccagcaaaacgcattgagcgtg
gccaatctcgatttctga
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