Rhodovulum sp. HP10: ACK8CO_12280
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Entry
ACK8CO_12280 CDS
T11157
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhov Rhodovulum sp. HP10
Pathway
rhov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACK8CO_12280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhov03021
]
ACK8CO_12280 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhov03400
]
ACK8CO_12280 (rpoC)
Enzymes [BR:
rhov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACK8CO_12280 (rpoC)
Transcription machinery [BR:
rhov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACK8CO_12280 (rpoC)
DNA repair and recombination proteins [BR:
rhov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACK8CO_12280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
XOE40469
LinkDB
All DBs
Position
2626814..2631058
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTTNPFNPLASPKQFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLSYGQMMTEEEYLDAQDQFGADAFT
AGIGAEAIREMLSQIDLEAEAERLREELKEATGELKPKKIIKRLKVVESFIESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYITMERKGMKGEGMAFADVDEVQHAL
DSGEVHLHAGVTARIKQIDEHGNEVYKRYETTPGRIRLGALLPMNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMGLGFREAFKAGISFGKDDMVIPNTKWEIVEGVRE
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDEVASAMMAEISAVRVDDAGAEKEPNSVY
MMAHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRSHDCGTENAITCEAAINDGEVVATLAERLLGRV
AADDVLKPGTDEVLVTRNELIDERKADAIEKAGVATVRIRSPLTCEAEEGVCAACYGRDL
ARGTKVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQEASQEGRVEFRNPN
LLTNAAGEQIVMGRNMQLAIIDDNDVERASFKLGYGTKVFVAEDARVARGDKLFEWDPYT
LPIIAEKAGRARLVDLVTGISVREDTDDATGMTQKIVSDWRTAPKGNELKPEIIIVDPET
GEPVRNEAGNPVTYPMSVDAILSVEDQQEIRAGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGYVRFGRDYKNKRRITIEPADETIQPVEYMVPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILAIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKW
EISDSGDTTLLKGEHVDKAEFDDANEKVLARGGRPAEGQPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGASQRVRRIAAERDQKVIDARQ
AEAISAAALAAPMDTFSSSDDDDLGLVETPESRE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaccaacccgttcaacccgctggcctcgcccaagcagttcgac
gagatcaaggtctcgctggcctcgcccgaacggatcctttcgtggtcctatggcgagatc
aagaaacccgagaccatcaactaccggacgttcaagcccgagcgtgacggtctcttctgt
gcgcggatcttcggaccgatcaaggactacgagtgcctttgcggcaagtacaagcgcatg
aaatatcgcggcgtcgtctgcgagaaatgcggtgtcgaggtgacgctgcagaaggtccgt
cgcgagcggatgggccatatcgagctggctgcgccggtcgcgcatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgcttcgcgatctcgaacgcgtg
ctctatttcgagaactacgtggtgatcgaacccggtctgaccgatctgagctacggccag
atgatgaccgaggaagagtatctcgacgcgcaggaccagttcggcgccgatgccttcacc
gccgggatcggcgccgaggcgatccgcgagatgctgtcgcagatcgatctcgaggccgag
gcagagcggctgcgcgaggaactaaaggaagccaccggcgaactgaagccgaaaaagatc
atcaagcggctgaaggtcgtcgagagcttcatcgaatccggcaaccgcccggaatggatg
gtgctgaccgtgatcccggtcatcccgccggaattgcgtcccctggtgccgctcgatggc
ggccgcttcgccacgtcggacctcaatgacctctaccgccgcgtgatcaaccggaacaac
cgtctgaaacggctgatcgagctgcgcgcacccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgataacggccgccgcggccgggtcatcacc
ggcgccaacaagcgtccgctgaaatcgctgagcgacatgctcaagggcaagcagggccgg
ttccgccagaaccttctgggcaaacgggtcgacttctcgggccgttcggtgatcgtgact
ggccccgagctgaagctgcaccagtgcgggctgccgaagaagatggcgctcgagctgttc
aagccgttcatctattcgcggctcgaggccaaggggctgtcctcgaccgtcaagcaggcc
aagaagctggtcgagaaggaacgtcccgaggtctgggacattctcgacgaggtgatccgc
gaacacccggtgatgctgaaccgggcgccgacgcttcaccgtctgggcatccaggccttc
gagccgacgctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgttccgctgagcctcgaggcccag
ctggaagcgcgggtcctgatgatgtcgaccaacaacgtgctgtcgcccgccaacggcgcg
ccgattatcgttccgtcgcaggacatgatcctcgggctctattacatcacgatggagcgc
aagggcatgaagggcgagggcatggcctttgccgatgtcgacgaggtgcagcacgcgctc
gattccggcgaggtgcatctgcatgccggcgtcacggcgcggatcaagcagatcgacgag
cacggcaacgaggtctacaagcgctacgaaaccacacccggccggatccggctgggggcg
ctgctgccgatgaacgccaaggcgccgttcgagctggtcaaccggctcctgcggaagaaa
gaggtgcagcaggtcatcgacaccgtctaccgctattgcggccagaaggagtcggtcatc
ttctgtgaccagatcatggggctcgggttccgcgaggcgttcaaggccgggatctccttc
ggcaaggatgacatggtcatcccgaatacgaagtgggaaatcgtcgagggcgtgcgcgag
caggtcaaggaattcgaacagcagtacatggacggcctgatcactcagggcgagaagtac
aacaaggttgtcgatgcctggtcgaaatgctccgacgaggtcgcctcggcgatgatggcc
gagatctcggcggtccgcgtcgacgatgccggtgccgagaaggaaccgaactcggtctac
atgatggcccattcgggcgcccggggctcgccggcgcagatgaagcagctgggcggtatg
cgcggcctgatggccaagccttcgggcgagatcatcgagaccccgatcatctcgaacttc
aaggaaggcctgaccgtgctcgagtacttcaactcgacccacggcgcccggaagggtctg
gccgataccgcgctgaagacggcgaactcggggtacctgacccggcgtctggtcgacgtg
gcccaggactgcatcgtgcgcagccacgattgcggcaccgagaacgccatcacctgcgag
gcggcgatcaatgacggcgaggtcgtggcaacgcttgccgagcgtctgctcggccgggtc
gcggccgatgacgtgctgaagcccggtaccgacgaggtgctggtcacccgcaacgaactg
atcgacgaacgcaaggcggatgcgatcgagaaggccggtgtcgccaccgtccggatccgg
tcgccgctgacctgcgaggccgaagagggcgtctgcgcggcctgctacggccgtgatctg
gcgcgcggcaccaaggtgaacatcggcgaggctgtcggtatcatcgccgcgcagtcgatc
ggcgagcccggcacccagctgacgatgcggaccttccacatcggcggtatcgcccagggt
ggccagcagtccttccaggaggccagccaggagggccgggtcgagttccgcaaccccaac
ctgctgaccaatgcggcgggcgagcagatcgtcatgggccggaacatgcagctggccatc
atcgacgataacgatgtcgagcgggcgagcttcaagctgggctacggcaccaaggtcttc
gtggccgaggatgcccgggtggcgcggggcgacaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaaggcggggcgcgccaggctcgtggacctcgtgaccgggatt
tcggtccgcgaggataccgacgatgccaccggcatgacccagaagatcgtgtccgactgg
cgcaccgcgcccaagggcaacgaactgaagcccgagatcatcatcgtcgatcccgaaacc
ggcgagccggtccgcaacgaagcgggcaacccggtcacctatccgatgtcggtggatgcg
atcctctcggtcgaggatcagcaggaaatccgggccggtgacgtggtggcgcgtatcccg
cgcgaaggggccaagaccaaggacatcaccggcggtctgccgcgggtggcggaactgttc
gaggcccgtcgtccgaaggatcacgcgatcatcgccgagatcgacggctatgtgcgcttc
ggccgcgactacaagaacaagcggcggatcaccatcgagccggcggacgagaccatccag
cccgtcgaatacatggtgcccaagggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggcgactacatcatggacggcaacccggcgccgcatgacatccttgcgatcatg
ggtgtcgaggcgctggcgaactatatgatcgacgaggtgcaggacgtctaccggctgcag
ggcgtgaagatcaacgacaagcatatcgaggtgatcgtccgccagatgctgcagaaatgg
gagatctcggattcgggagacaccacgcttctgaagggcgagcatgtcgacaaggccgag
ttcgacgacgccaacgaaaaggtgctggcgcgcggcggacgccctgccgagggccagccg
atccttctggggatcaccaaggcctcgctgcagacccggtccttcatctcggcggcctcc
ttccaggagacgacgcgggtgctgaccgaagcctcggtccagggcaaacgcgacaagctg
gtcgggctgaaggaaaacgtcattgtcggccggctgatcccggcgggcaccggcggggcc
agccagcgcgtgcgccgcatcgcggccgagcgcgaccagaaggtcatcgatgcccgtcag
gccgaggccatttcggccgcggctctggcggccccgatggacactttcagttcgtccgat
gacgacgatctggggctggtggaaacgcccgagagccgcgaataa
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integrated database retrieval system
