Rhodococcus sp. WB1: A4U64_01330
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Entry
A4U64_01330 CDS
T10270
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhow Rhodococcus sp. WB1
Brite
KEGG Orthology (KO) [BR:
rhow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhow03016
]
A4U64_01330
Enzymes [BR:
rhow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4U64_01330
Transfer RNA biogenesis [BR:
rhow03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4U64_01330
Prokaryotic type
tRNA splicing ligases
A4U64_01330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANZ27898
LinkDB
All DBs
Position
275440..276861
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AA seq
473 aa
AA seq
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MRIVEETPYRFRIDRAGAMRVPGIVFAARSLLPVAEGDEALTQVANVATLPGIVTASFAM
PDVHWGYGFPIGGVAATDIDDGGVVSPGGVGFDISCGVRLLIARDADRSALASRLGVLMD
RLGRVVPRGMETRGVWELPDRTVLRQVLAGGARFAVEQGHGVARDLERCEDRGVLDGADP
DSVSDRAVERGLGQLGSLGSGNHFLEVQAVERVFDPDTARLMGLDVGTVCVMIHCGSRGL
GHQICTDHVREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLT
EAARRVFEETAGTTLDLLYDISHNLAKIERHEVGGRVRALCVHRKGATRSLPPDHPDVPA
DLTDAGQPVLIPGTMGTASYVLAGVAGNPAFYSTAHGAGRVQSRHRAARHTDGRAVRDAL
ETHGVLVRGSSWRGLAEEKPEAYKDIDAVAEVSERAGLARRIARLVPLGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcgtcgaggagaccccgtaccggttccggatcgatcgggccggcgcgatgcgc
gtacccgggatcgtcttcgccgcccggtccctgctccccgtcgcggagggggacgaggcg
ctcacccaggtcgccaacgtcgcgacgctgcccggcatcgtcaccgcgtcgttcgccatg
ccggacgtgcactggggttacggctttcccatcggcggggtcgcggcgacggacatcgac
gacggcggcgtcgtctcccccggcggcgtgggcttcgacatctcgtgcggcgtacggctc
ctgatcgcacgcgacgcggaccggtccgccctcgcgtcgcgcctgggtgtgttgatggac
cggctcggtcgcgtcgtaccgcgcggcatggagacccggggcgtgtgggaactcccggac
cgtaccgtgctgcggcaggtgctcgcgggcggcgcccgcttcgcggtggagcaggggcac
ggcgtcgcccgcgacctcgagcggtgtgaggaccgtggcgtgttggacggcgccgacccg
gactcggtgagcgaccgtgccgtcgagcggggcctcggtcagctcggcagcctcgggtcg
ggaaaccacttcctcgaggtccaggccgtcgagcgggtcttcgatccggacaccgcgcgg
ctgatggggctcgacgtgggcacggtgtgcgtgatgatccactgcggatcccgcggcctg
ggccaccagatttgcaccgaccatgtacgtgagatgggtaaggcaatgggccgctatggg
attcacgtccccgaccggcagctggcgtgcgttccggtccggtcgccggagggggaggcc
tatctcggggccatggtggcggcggccaactacggccgggccaaccggcagttgctcacc
gaggcggcccgccgggtcttcgaggaaacggccggcacgaccctcgacctcctctacgac
atctcgcacaacctggcgaaaatcgagcggcacgaggtcggcggccgggtccgcgcgctg
tgcgtgcaccgcaagggcgcgacgcggtccctgccgccggaccaccccgacgtgcccgcc
gacctcaccgatgcagggcagcccgtgctcatccccggcacgatgggcaccgcgtcgtac
gtgctggccggtgtcgccgggaacccggcgttctactccaccgcgcacggggccggtcgg
gtgcagagccggcaccgtgctgcccggcacaccgacggccgggcggtgcgcgacgcactc
gagacgcacggggtgctcgtgcggggaagctcgtggcggggactcgccgaggagaagccg
gaggcgtacaaggacatcgacgcggtggcggaggtgagcgaacgtgcgggcctggcccgc
cggatcgcccggctcgtgccgctcggcgtcgtcaaggggtga
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