Rhodococcus sp. WB1: A4U64_12915
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Entry
A4U64_12915 CDS
T10270
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhow Rhodococcus sp. WB1
Pathway
rhow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4U64_12915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhow03019
]
A4U64_12915
Messenger RNA biogenesis [BR:
rhow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4U64_12915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
TPR_DNAAF5
Peptidase_M16_C
Motif
Other DBs
NCBI-ProteinID:
ANZ25473
LinkDB
All DBs
Position
complement(2924348..2926165)
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AA seq
605 aa
AA seq
DB search
MSRPSRGRGRATRNAGPPSGRPARRTVQTSANTQRPDPRKVADMSGRLGTPPKAPPKGLR
VVALGGIGEIGRNMTVFEHQGRLLVIDCGVLFPEDQQPGVDLILPDFRHIEDRMDDVEAV
VLTHGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRLRPNLVEVVEGDKTTHG
PFECEYFAVNHSIPDALAVAVRTEAGLVLHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVMPEREIGGVLDNVIGKATQRVIVASFASHVHRIQQVVDVAGRYNR
RIAFVGRSMVRNMQIAQDLGYLRVPDGLVVDLDTAATLPDNRLVLISTGSQGEPLSALSR
MARGEHRQINIKADDLVILASSLIPGNENSVFAVVNGLAKRGATVVTQQNAKVHVSGHAS
AGELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRDRIVLAEDGVVVDLVDGLAE
IVGQVPVGHVYVDGLSVGDVGESTLSDRLILGEGGFISISVAVDENGRAVSTPGVSGRGF
SDDPGALSEAAQLVDKVLNELAAEGIDDAHRIAQAIRRVVGRWVSDTYRRRPMIVPTVIT
VPGPA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgcccgtcgcgcggccggggccgcgccacccgcaacgccggaccgcccagcggc
cggcccgcgcgccggaccgtgcagacctcggccaacacccagcggcccgatccgcgcaag
gtggcggacatgtcggggcgcctcggcaccccgccgaaggcgccgccgaagggcctgcgc
gtcgtcgcgctcggcggcatcggcgagatcggccgcaacatgacggtcttcgagcatcag
ggccggctcctcgtcatcgactgcggcgtgctcttccccgaggaccagcagcccggcgtc
gacctgatcctgccggacttccggcacatcgaggaccgcatggacgacgtcgaagccgtc
gtcctcacccacggccacgaggatcacatcggggcggtgccgttcctgctgcgcctgcgt
cccgacatcccggtcgtgggctcgaagttcaccctcgcgctcgtcgccgcgaaatgccgc
gagcaccggctgcggcccaacctcgtcgaagtcgtcgagggggacaagaccacgcacggc
ccgttcgagtgcgagtacttcgccgtcaaccactcgatcccggacgcgctcgccgtcgcc
gtccgcaccgaggccgggctcgtgctgcacaccggcgacatcaagctcgaccagttgccg
ctcgacggccgcctcaccgacctcgccggattctcccggctcggcgacgagggcgtcgac
ctgttcctcgtcgactccaccaacgccgaggtgccgggcttcgtgatgcccgaacgcgag
atcggcggcgtcctggacaacgtcatcggcaaggccacccagcgcgtgatcgtcgcgtcc
ttcgccagccacgtgcaccgcatccagcaggtcgtcgacgtcgccgggcggtacaaccgc
cgcatcgccttcgtcggacggtcgatggtgcgcaacatgcagatcgcgcaggacctcggc
tacctgcgggtgccggacgggctcgtcgtcgatctcgacaccgccgcgacattgcccgac
aaccggctcgtgctgatctccaccggctcgcagggtgaaccgctgtccgcgctgtcgcgc
atggcgcgcggcgagcaccgccagatcaacatcaaggccgacgatctcgtcatcctggct
tcctccctgatcccgggcaacgagaattcggtgttcgcggtcgtcaacggcctcgccaag
cgaggcgccaccgtcgtcacccagcagaacgcgaaggtgcacgtctccggccacgcctcc
gcgggcgagctgctgtacctgtacaacgcggtgcgcccgacgaatgcgatgccggtgcac
ggcgaatggcggcacctgcgggccaacgcggcgctggccgaggcgaccggggtgccgcgg
gaccggatcgtgctcgccgaggacggcgtggtcgtcgacctcgtcgacgggctcgcggag
atcgtcggacaggtacccgtcggccacgtctacgtcgacggcctgtccgtcggtgacgtc
ggcgaatcgaccctgtcggaccggttgatcctcggcgagggcggcttcatctccatctcc
gtcgccgtggacgagaacggtcgcgccgtgagcaccccgggggtgtccggccgcggcttc
tccgacgacccgggagcgctctccgaggccgcgcaactcgtggacaaggtcctcaacgag
ctcgccgccgagggtatcgacgacgcccaccgcatcgcccaggcgatccgccgtgtcgtc
gggcgctgggtgtccgacacctaccgtcgccggccgatgatcgtgccgacggtgatcacc
gtcccgggcccggcgtag
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