Rhodococcus sp. WB1: A4U64_15855
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Entry
A4U64_15855 CDS
T10270
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhow Rhodococcus sp. WB1
Pathway
rhow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4U64_15855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhow03019
]
A4U64_15855
03009 Ribosome biogenesis [BR:
rhow03009
]
A4U64_15855
Enzymes [BR:
rhow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4U64_15855
Messenger RNA biogenesis [BR:
rhow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4U64_15855
Ribosome biogenesis [BR:
rhow03009
]
Prokaryotic type
rRNA helicases
A4U64_15855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANZ25981
LinkDB
All DBs
Position
complement(3602898..3604820)
Genome browser
AA seq
640 aa
AA seq
DB search
MQDPEADTATPTFADLDIDARVLQALSDVGYETPSPIQAATIPPLLEGRDVVGLAQTGTG
KTAAFAVPILSRIDTAVKRPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILA
DTPETKQVALFSATMPGAIRRLSKQYLHDPVEITVKSKTTTSANITQRWVLVSHQRKLDA
LTRILEVEQFEAMILFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERH
LLKAIERATRQPLTEIQLPSVEDVNAQRVEKFNDSITEALTSDHLSLFRTFVEDYEREHD
VPLADIAAALAVLSRDGESFLMEAEPEPVAPPRREREPRERPPRRFDDDGASRVGRDGQE
MATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPKDLSPETLEAL
RGTRISGVLIQLQPDSGAPAGRPSTYRQRDDRGERRQGERKEYGGKKDWGDRSGRNKDFG
GRGDRFGDKPNRGFRERSGERGQSGGHGSGGHSGGYRGRD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagaccccgaagccgacaccgctacccccacgttcgccgatctggacatcgacgcc
cgtgtgctgcaagcgctttcggatgtgggctacgagaccccgtcgccgatccaggcggcc
accatcccgccgctgctggaggggcgcgacgtcgtcggtctcgcgcagaccggcaccggc
aagaccgccgcgttcgcggtgccgatcctgtcgcggatcgacaccgcggtgaagcggccc
caggcactggtcctggctcccacccgtgagctcgccctgcaggtcgcggaggctttcggt
aagtactcggcgcacatcccgggtctgcacgtgctgcccatctacggtggccagagctac
ggcgtgcagctgtccgggctgcgccgtggcgcgcacgtcatcgtgggcacccccggacgt
gtgatcgatcacctcgccaagggcaccctcgacatctccgagctcgagttcctcgtgctc
gacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgaacggatcctcgcc
gacaccccggagaccaagcaggtcgcgctgttctcggcgaccatgccgggcgcgatccgc
cggctgtccaagcagtacctgcacgacccggtcgagatcacggtcaagtcgaagacgacg
acgtcggcgaacatcacccagcgctgggtgctcgtgtcgcaccagcgcaagctcgacgcc
ctgacccggatcctcgaggtcgagcagttcgaggcgatgatcctcttcgtccgtacgaag
caggccaccgaggacctcgcggagcggctgcgagcccgcggtttctcggccgccgcgatc
aacggtgacatcgtgcaggcccagcgcgaacgcaccatcggccagctcaagagcggtgcg
ctggacatcctcgtcgcgacggacgtggcggcccgcggtctggacgtcgaccgcatcagc
cacgtcgtgaactacgacatcccgcacgacaccgagtcctacgtgcaccgcatcggccgc
accggccgcgccgggcgcagcggtgacgccctgctgttcgtcgccccccgcgagcggcat
ctgctcaaggcgatcgagcgggccacccggcagccgctcaccgagatccagctgccgtcg
gtggaggatgtcaacgcccagcgcgtcgagaagttcaacgattcgatcaccgaggcgctc
acgtcggatcacctgtcgctgttccgcacgttcgtcgaggactacgagcgcgagcacgac
gtgcccctcgccgacatcgcggcagcgctggccgtgctctcccgcgacggggagtcgttc
ctcatggaggccgaacccgagcccgtggcgccgccgcggcgggaacgcgagccgcgggag
cggccgccgcgccggttcgacgacgacggtgcgtcacgcgtcgggcgcgacgggcaggaa
atggcgacctaccgcatcgccgtgggtaagcggcaccgggtggtgcccggcgcgatcgtc
ggcgccatcgccaacgagggcggcctgcgccgcagcgacttcgggcacatcagcatccgc
ccggaccacagcctcgtcgagctgccgaaggacctgtcgccggagacgctcgaggcgttg
cgcggcacccgcatctccggggtgctcatccagctgcagcccgacagcggcgcaccggcg
ggtcggccgtcgacctaccgtcagcgcgacgaccgcggcgaacgccgtcagggtgagcgc
aaggagtacggcggcaagaaggactggggcgatcgcagcggccgcaacaaggacttcggt
gggcgcggcgaccggttcggcgacaagccgaaccgcggattccgtgaacgctccggcgag
cgcgggcagtccggtggacacggctcgggcggccacagcggcggctaccgcgggcgcgac
tga
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