Rhodococcus sp. WB1: A4U64_17845
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Entry
A4U64_17845 CDS
T10270
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhow Rhodococcus sp. WB1
Pathway
rhow03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A4U64_17845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhow03400
]
A4U64_17845
Enzymes [BR:
rhow01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A4U64_17845
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A4U64_17845
DNA repair and recombination proteins [BR:
rhow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A4U64_17845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
DprA_WH
DUF7129
DUF5795
Motif
Other DBs
NCBI-ProteinID:
ANZ26332
LinkDB
All DBs
Position
4031408..4032274
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGAVVGRIDVAALSVLQTADPPITVLQGRDVTGVSRFGKFLA
VDCAGLWLVTHLSRAGWLRWQDNPSPAPPKLCRGPLALRVHLFTPDAATPAFDLTEAGTR
KRLAVWIADRPQQVPGIARLGPDALAVTADELAARLAGSTARLKTALTDQQVLAGIGNAY
SDEILHVARLSPFAPAGRLTDEQRQALYDALRTVLLDAVSRSVGQDAARLKGEKRSGMRV
HARTGLPCPECGDTVREVAYAERSFQYCPACQTGGKILADRRLSRLVK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggaggccctggcggtgttcctgcgcgagcacgccgtcggt
gccgtcgtcggccggatcgacgtggcggcgctcagcgtcctgcagaccgccgacccgccg
atcaccgtgctgcagggccgcgacgtcaccggcgtgtcccgcttcggaaagttcctggcc
gtcgactgcgccggtctgtggctcgtcacgcacctgtcgcgggcggggtggctgcgctgg
caggacaacccgtcgccggcaccgccgaagctgtgccgggggccgctcgcgctgcgggta
cacctgttcacccccgacgccgccacccccgccttcgacctcaccgaggccggcacccgc
aagcgcctcgccgtgtggatcgccgaccgtccgcagcaggtgcccggcatcgcccggctc
ggtcccgacgccctggccgtcaccgccgacgagctggccgcgcggctggcgggcagcacc
gcacgcctgaagaccgccctcaccgaccagcaggtgctcgccgggatcggcaacgcctac
tccgacgagatcctgcacgtcgcccggctgtcgccgttcgcgccggcgggccggctcacc
gacgagcagcggcaggcgctgtacgacgcgctgcgcacggtgctcctcgacgccgtgagc
cgttccgtgggccaggatgccgcgcggctcaagggtgagaagcggtccgggatgcgggta
cacgcccgcacgggcctgccgtgcccggagtgcggcgacaccgtccgcgaggtcgcctac
gccgaacgttccttccagtactgccccgcgtgccagaccggcgggaagatcctcgcggac
cggcggctgtcgcggctggtcaagtga
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