Rhodococcus sp. WB1: A4U64_18025
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Entry
A4U64_18025 CDS
T10270
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhow Rhodococcus sp. WB1
Pathway
rhow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A4U64_18025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhow03400
]
A4U64_18025
Enzymes [BR:
rhow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A4U64_18025
DNA repair and recombination proteins [BR:
rhow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A4U64_18025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANZ26360
LinkDB
All DBs
Position
complement(4063891..4066152)
Genome browser
AA seq
753 aa
AA seq
DB search
MTTRTFEGRRLNLTNLDKVLYPSTGTTKADVVDYYVAVAPVLLPHVAGRPGTRKRWPEGV
GGESFFEKNLASHAPKWLTRKTVHHKQRSVTYPVFDSVASLAWLGQQAALELHVPQWRFS
GSVPGPATRIVFDLDPGEGVTLAQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASTVAKQVAINLETLHPDLVTATMAKAVRGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLHQLRFDEVLARLEAGPDPLAALDPPLPESDALTEYRHKR
DPSRTPEPVPATVGSGPGNSFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGGMTIWDTGTYDTEKWRDDEVIVRLHGARVQGRY
ALIRTAGNQWLAHRMKDQSAPPGPPTSFPRDLEPMLATPGEVTGLDAGEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRILDGHEVVLDGEVVACDTLGVTSFRRLR
TGGTPQYFVFDVLFLDGVTLYRKPYSDRRRVLDALAAAADGLVVPDLLHGNGSEALEEST
RRGWEGVVAKRRNSVYVPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVQ
GEAGLEYVGRVGTGFDEPQLAELSAAMAGLRRRTTPFAGDVPREDARDAVWVSPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVARGSG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctg
tacccgagcacgggcacgacgaaggccgacgtggtcgactactacgtcgccgtcgccccg
gtgctgctacctcacgtcgcgggccggcccggcacccgcaaacgctggcccgagggtgtc
ggcggcgagtcgttcttcgagaagaacctcgcctcccacgcgccgaagtggctcacccgc
aagactgttcaccacaagcagcggtcggtgacgtatccggtcttcgactccgtggcgtcg
ctggcctggctggggcagcaggcggcactcgagctgcacgtgccgcagtggcggttctcg
ggttccgttccgggtcccgcgacgcggatcgtgttcgacctcgacccgggggagggggtc
acgctggcgcagtgcgccgaggttgcccgcctggtgcgcgacatggtcggcgggctgggc
tggccggcctacccggtcaccagcggcagcaaggggatacacctgtatgtgccgctcgac
cgcgagcttgcaccgggcggggcgtcgaccgtggcgaagcaggtggcgatcaacctcgag
acgctgcatcccgacctggtcaccgccaccatggcgaaggccgtgcgcggtggccgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgcgccgtattccctgcgc
ggtcgggagcagccgtgggtcgccgcgccccgcacctgggacgaactcgacgaccccggg
ttgcaccaattgcggttcgacgaggtgctcgcgcgcctcgaggccggacccgacccgctc
gccgcgctcgacccgccgctgcccgagtccgacgccctgaccgagtaccggcacaagcgc
gacccgtcccgcacccccgaacccgtccccgccaccgtgggatccggaccgggcaattcc
ttcgtcatccaggagcaccacgcccgccgcctgcactacgacctgaggctcgagcgcgac
ggggtgctcgcgtcgtgggcggtgccgaagaatctgccggacgatcccggccgcaacaac
ctcgcggtgcgcaccgaggaccatccgctcgagtacctcaccttccacggcgtgattccc
aagggggagtacggcgccggcggcatgacgatctgggacaccggcacctacgacaccgag
aaatggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcagggccggtac
gcgctgatccgcacggccggcaaccagtggctcgcgcaccgcatgaaggaccagagcgcg
ccgccgggcccgccgacgagcttcccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccggtctcgacgccggcgaatgggcgttcgagggcaagtgggacggctaccgc
gccgtcgccgagatcgagaacgggcagctgcggctgcattcgcgttccggccgcgacatc
accggcgactaccccgctctcgccgatctcacccgcatcctcgacgggcacgaggtggtc
ctcgacggcgaggtggtcgcgtgcgacaccctcggcgtcacaagcttccggcggctgcgg
accgggggcaccccgcagtacttcgtgttcgacgtcctcttcctcgacggggtgaccctg
taccggaagccgtattccgaccggcggcgcgtgctcgacgcgctcgccgccgcggccgac
gggctggtcgttccggacctgttgcacggcaacggatccgaagcgctggaggagagcacc
cggcggggctgggagggggtggtggccaagcggcggaactcggtgtacgtgccgggtcgg
cgcagccccgactgggtgaagtcgaagaactggctcacccaggacgtcgtcatcgggggc
tggcgcctcggcaagggggcccgcgccggcaccttcggctcgctgctggtcggcgtgcag
ggcgaggccgggctggagtacgtcggccgcgtcggcaccggcttcgacgaaccccagctc
gccgaactgtcggccgccatggcgggtctgcggcgccgcaccacccccttcgccggcgac
gtcccgcgcgaggacgcgcgggacgcggtgtgggtgagcccgaagctggtgggggaggtg
cggttccgggagtggaccgacgccggcaagctctggcatccgagctggcgcgggttgcgc
gacgacatcgacccgcaggacgtggcccgcggcagcggatga
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