Rhodococcus sp. D-6: RBB84_00090
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Entry
RBB84_00090 CDS
T10622
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rhox Rhodococcus sp. D-6
Pathway
rhox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RBB84_00090
09124 Replication and repair
03420 Nucleotide excision repair
RBB84_00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhox03021
]
RBB84_00090
03400 DNA repair and recombination proteins [BR:
rhox03400
]
RBB84_00090
Enzymes [BR:
rhox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBB84_00090
Transcription machinery [BR:
rhox03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RBB84_00090
DNA repair and recombination proteins [BR:
rhox03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RBB84_00090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
XBW04429
UniProt:
A0AAU7UXA8
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All DBs
Position
complement(15384..17042)
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AA seq
552 aa
AA seq
DB search
MADGPLIVQSDKTVLLEVDHDRANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQALLVDIVDTMSRYGRLQLVKNPAHGLTLVSLDRAVLAEVL
RNKKIAPMLGARIDDDTVIVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHSISLDFETN
PWHLRDYQELAADSFWSGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVKSILEQHQDAPTLIIGAY
IDQLDELGEALDAPVIKGSTKTKEREALFDRFRSGELKVLVVSKVANFSIDLPEASVAIQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPQIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacggaccgctcatcgtccagtccgacaagaccgtgctcctcgaggtcgatcac
gaccgggcgaacgaggcgcggcaggcgatcgcaccgttcgccgagctcgaacgcgccccc
gagcacatccacacctaccgggtgacgccgctggcattgtggaacgcccgtgccgccggt
cacgacgccgagcaggtcgtcgacgcgctggtctcgcattcccggttcgccgtcccgcag
gcgctgctcgtcgacatcgtcgacaccatgagccgttacgggcgcctccagctggtcaag
aaccccgcccacggcctgaccctggtcagcctcgaccgggcggtgctcgccgaggtcctg
agaaacaagaagatcgccccgatgctcggtgcgcgcatcgacgacgacaccgtgatcgtg
catccgagcgagcgcggacgcgtcaagcagatgctgctgaagatcggctggccggccgag
gacctcgcggggtacgtcgacggcgaggcccattcgatctcgctggacttcgagacgaac
ccctggcacctgcgcgactaccaggaactggcggccgactcgttctggtcgggcggctcg
ggtgtcgtggtgctgccgtgcggcgccggtaagacgatggtcggcgcggccgcgatggcg
aaggccggcgcgacgacgctcatcctcgtgacgaacacggtcgccgggcgccagtggaag
cgcgagctgatcgcccgcacctccctcaccgaggacgagatcggcgagtactcgggcgag
aagaaggagatccgcccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggtgaataccgcaatctcgagttgttcgactcccgcgactgggggctgatgatctacgac
gaggtgcacctgctgccggcgccggtcttccgtatgaccgcagacctgcagtcccgccgc
cgcctcggtctcaccgcgaccctcgtgcgcgaggacggacgcgaaggcgacgtcttctcg
ctcatcggcccgaagcggttcgacgcgccgtggaaggacatcgaagcccagggctggatc
gcccccgccgactgtgtggaggtccgcgtgaccctcaccgacgccgagcgcatggcgtac
gcggtcgccgagcccgaggaacggtacaagctgtgctcgaccgcgcgcaccaagatcccg
gtcgtgaagtcgatcctcgagcagcaccaggacgccccgacactgatcatcggtgcctac
atcgatcagctcgacgagctcggtgaagcgctcgacgccccggtcatcaagggttcgacg
aagacgaaggaacgcgaggcgctgttcgaccggttccggtcgggcgagctgaaggtgctc
gtcgtgtcgaaggtcgcgaacttctccatcgacctgccggaggcctcggtcgcgatccag
gtgtcgggcaccttcggttcgcgtcaggaggaggcccagcgtctcgggcggctgctgcgt
ccgaagcacgacggcgggcaggcccacttctactccgtggtctcgcgcgacaccctcgac
gccgaatacgccgcgcatcgccagcggttcctcgccgagcagggttacgcgtaccggatc
accgacgccgacgacctgctcggacctcagatcggctga
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