Rhodococcus sp. D-6: RBB84_01880
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Entry
RBB84_01880 CDS
T10622
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhox Rhodococcus sp. D-6
Pathway
rhox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RBB84_01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhox03400
]
RBB84_01880
Enzymes [BR:
rhox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RBB84_01880
DNA repair and recombination proteins [BR:
rhox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RBB84_01880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
PhoH
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
XBW04754
UniProt:
A0AAU7UXT8
LinkDB
All DBs
Position
377506..380838
Genome browser
AA seq
1110 aa
AA seq
DB search
MPDTAITDPRAAGGPPPAGFDLLGRLPSGTTVLEASAGTGKTYAIVGLATRFVAEGRAHL
SDLLLVTFSRAATQELRERTRNRFAQVATALADPESARASTDMLVRHLASEDVDARRARL
RQALSDFDSGTISTTHGFCRRMLDELGIAGEREPDVTVVEDVDDLRVEVVDDLYLRRYGR
GQAPITYAEAAVAAKEAIFDPQAELAPNDADGTAAGERVEFARAVREEVERRKRRLGLRD
FDDQLSLLHAVLGDPEHGDAACRRMRARFSVVLVDEFQDTDPKQWEILRRAFHGHSTLVL
VGDPKQAIYAFRGAEVLSYLDAVSESDTYCELTTNWRSDGDLVRALEHVHLGAALGDPRI
VVNPVKAAAADSRLSGIASLRVRHLPRAGAGPLNDWGFPQNLDGLRGRVARDVAADIVRL
LDDENVTVDLGSGPERVQPGHIAVLVRKHKQVTLVHDALTKANVPCVVAGGTSVFATPSA
QHWLWVLYALEQPHRADRVRLAALTPLLGRTMTDIDSEGEALVVEVGGLLRELNDVYART
GFAAVFERLASFGSVEARLLDQPSGERTLTDIRHVAQLLEDVASAQSLGLAALTRWLEDR
INDPDRGGADRIRRLDSDAAAVQILTVHGSKGLEFPVVHVPYGWDAAKNPEPDKLLLHEN
GRRILDVGGKSGPGYVARRRQHELEEAGEELRLLYVAVTRAQCALTLWWAPSTPTSRSPL
HRLLFARDPGSAEVSAEGRIGHDEAMAEEFDRWAARADGVIAAEAVGPHPIPVLRWTRPR
VETGPLAAARFDRVVDENWRRTSYSALTASVHDAPVVSGEVEEPVTTDEPAEPPLSAPEA
AREGIPSPMNGLPGGTIFGTLVHAVLEVVDTSAADLEAELLDCCHETVRRQMSPIDPVQL
AAALLPVMRTPLGPLGRTLADFTPSDRLSELDFELPLTGGDSPVPVTVTLDAVGGLLRRH
LPADDPMATYADLVRTLESVPLRGYLNGSIDAVLRTDGPRFVVVDYKTNRLAPVDELTTA
HYTRESMAAEMLRAHYPMQALLYSVALHRYLRWRMRDYDPHVHLGGVQYLFVRGMAGPDS
PPGSGVFDWHPPADLVTDLSDLLAGKAMIS
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgataccgccatcaccgatccgcgcgccgcgggcggtccgccgccggcaggcttc
gatctgctcggccggctcccgagcggcaccaccgttctcgaggccagcgcgggaacgggg
aagacgtacgcgatcgtcgggctcgccacccggttcgtcgccgaagggcgcgcccacctg
tcggatctgctgctcgtcaccttcagccgggctgcgacgcaggaactgcgcgaacgtacc
cggaaccggttcgcgcaggtcgccaccgccctcgccgatcccgagagtgcgcgggcgagc
accgacatgctcgtccgtcatctcgcgagcgaggacgtcgacgcgcggcgggcccgccta
cgacaggcgttgtccgacttcgactccggcaccatttccaccacgcacggcttctgccgc
cgcatgctcgacgaactcgggatcgccggtgaacgcgaacccgacgtcacggtcgtcgag
gacgtcgacgacctgcgggtggaggtcgtcgacgatctctacctgcggcgctacggcagg
ggacaggcccccatcacctacgccgaggcggccgtcgccgcgaaggaggcgatcttcgac
ccgcaggccgaactcgcaccgaacgacgccgacggcaccgcggcaggcgagcgtgtggaa
ttcgcgcgtgcggtccgcgaggaggtcgaacggcgcaagcgccggctcggactgcgcgac
ttcgacgaccagttgtccctactgcacgcggtgctcggcgatccggagcacggcgacgcc
gcctgccggcggatgcgtgcgcgcttctccgtcgtcctcgtcgacgagttccaggacacc
gaccccaagcagtgggagatcctgcgccgggcgttccacgggcacagcacgctcgtgctc
gtcggcgacccgaaacaggcgatctacgccttccgcggcgcggaggtgctcagctatctc
gacgccgtctccgaatccgacacctactgcgagctgaccaccaattggcgtagcgacggc
gatctcgtccgggcgctcgaacacgtccatctcggtgcggctctcggtgatccccgcatc
gtggtgaacccggtgaaggcggcagccgccgattcccggctttcgggtatcgcgtccctg
cgggtgcgtcacctgccccgcgccggtgccggtccgctcaacgactggggtttcccgcag
aacctcgacggcttacgtgggcgggtcgctcgcgacgtggcggccgacatcgtgcgcctg
ctcgacgacgagaacgtcaccgtcgacctcggttccgggcccgagcgtgtgcaacccggg
cacatcgcggtcctcgtgcgcaaacacaaacaggtgacgctcgtccacgacgcgctgacg
aaggcgaacgtgccgtgcgtggtcgccgggggcacgagtgtgttcgccacaccgtccgca
cagcactggctgtgggttctctatgcgctcgagcagccccatcgcgccgatcgcgtccgg
ctcgccgcgctcaccccgctgctcggccgcacgatgaccgacatcgattcggagggcgaa
gcgctggtcgtggaggtcggcggactgctccgcgaactgaacgacgtctacgcccgcacc
ggcttcgccgccgtcttcgaacgcctcgcgtccttcggttcggtcgaggcccgcctcctc
gatcagccgtccggggaacgcaccctcacagacatccggcacgtcgcacagctgctcgag
gacgtcgcctcggcacagtcgctggggctggccgcactcacccgctggctcgaggatcgc
atcaacgaccccgaccgaggtggagccgaccggatccggcgcctcgacagcgacgccgcg
gcggtccagatcctcaccgtgcacggcagcaagggactcgaattccccgtcgtccacgtc
ccgtacgggtgggatgccgcgaagaaccccgagcccgacaagctgctgctgcacgagaac
ggccgacgcatcctcgatgtgggcggcaagagcggtcccggttatgtcgcgcggcggcgt
cagcacgaactcgaggaggcgggagaggaactgcgcctgctgtacgtggcggtgacgcgc
gcgcagtgtgcgctcaccctctggtgggcgccgtccacccccacctcgcggtctccgctg
caccggttgctgttcgcccgcgatcccggttcggcagaggtctccgcggaaggccggatc
ggccacgacgaggccatggccgaggaattcgaccggtgggccgcgcgcgccgacggggtc
atcgccgccgaagcggtcgggccgcacccgattccggtgttgcgctggacccgcccccgc
gtggagaccggcccactcgccgccgcgcgcttcgatcgggtcgtcgacgagaactggcgc
aggacctcctattcggcgctcaccgcctcggtgcacgatgcgcccgtggtgagcggtgag
gtggaggaaccggtgacgaccgacgagcctgccgagcctccgctgagcgcaccggaagcg
gcgcgcgaaggcattccgtcaccgatgaacggactgcccggcggcacgatcttcggcacg
ctggtgcacgccgtcctcgaggtcgtcgacacctccgccgccgacctcgaggccgaactg
ctcgactgctgccacgagacggtgcgacgccagatgtcgccgatcgaccccgtccagctc
gcggcggcgttgctcccggtgatgcgcaccccgctcgggccactcggccggaccctcgcc
gacttcacgccgtccgaccggctctccgaactcgacttcgagttgccgctcaccggaggc
gacagcccggtgcccgtcaccgtcaccctcgacgcggtcggtgggttgctgcgccggcac
ctgcccgccgacgatccgatggcgacctacgccgatctggtgcgcaccctcgagtccgtg
ccgctgcggggttacctcaacggcagtatcgacgccgtgctgcgcaccgacggtccgcga
ttcgtcgtcgtcgactacaagaccaaccggctcgcgcccgtcgacgaactgaccaccgcc
cactacacccgcgagtcgatggcggcggagatgctccgcgcgcactatccgatgcaggct
ctgctctattccgttgccctgcaccgttatctgcggtggcggatgcgcgactacgacccg
cacgtccacctcggtggtgtgcagtacctgttcgtccgcggcatggccggaccggacagt
ccacccggcagcggcgtgttcgactggcatccgccggccgatctcgtcaccgacctgtcc
gacctcctcgccggaaaggccatgatttcgtga
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