Rhodococcus sp. D-6: RBB84_05050
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Entry
RBB84_05050 CDS
T10622
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhox Rhodococcus sp. D-6
Pathway
rhox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB84_05050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhox03019
]
RBB84_05050
03400 DNA repair and recombination proteins [BR:
rhox03400
]
RBB84_05050
Enzymes [BR:
rhox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBB84_05050
Messenger RNA biogenesis [BR:
rhox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBB84_05050
DNA repair and recombination proteins [BR:
rhox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBB84_05050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
DprA_WH
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
XBW05319
UniProt:
A0AAU7UZ84
LinkDB
All DBs
Position
complement(1061688..1063847)
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AA seq
719 aa
AA seq
DB search
MTNSTDLLRDDAEHLLRELAGPDARLRDDQWVAIEALVVHRRRALVVQRTGWGKSAVYFI
SAKLLRRQGRGPTVIVSPLLALMRNQVAAAERAGVHAATINSGNVTEWAAIHERIAAGEV
DVLLVSPERLNNPDFRDQVLPSLARDAGLVVVDEAHCVSDWGHDFRPDYRRIRTLVAELG
DDIPVLATTATANDRVVADIAAQLGVGGSSDLGGSSSAGSGGTLVLRGGLDRPSLHLSVV
RIDEPARRAAWLAQHLKDLPGSGIVYALTVSAARDLAALLTDHGYAVAAYTGQTEPTERE
QLEADLLDNKVKALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTERAEV
VLLPGPEDRRIWQWFASVAFPDEALVRRVIAALDTERPVSTPALEPRVDLTRSRLEMVLK
VLDVDGAVKRVKGGWIATGQPWTYDEERYGRLEEARAAEQEAMLEYERTTECRMVFLRRQ
LDDPDLDTRSPGCDHTAGGPGCGRCDNCIGSRWETSVGDDEVARTRARLERPGVDLPPRR
QWPTGMSTLGIPLSGRITDGPRPGRVLGRLSDLGWGPRLRELLDGPDREVPKAVVDASIA
VLAAWDWEDRPTAVMAMDSPTHSLLVESLASRLAQIGRLRDLGVLRRRGGNTEPTAANSA
YRVAALIDAWERPDNLGSSGPILLIDAVTDTGWTFTMAARTLVAAGADAVLPYALASPK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgacgaactccaccgacctgttgcgcgacgatgccgagcacctcctccgcgagctggca
ggccccgatgcccggctccgcgacgaccaatgggtcgcgatcgaggcgctcgtggtacac
cgtcgccgcgccctcgtcgtccagcgcacaggctggggaaagtcggccgtctacttcatc
tccgccaaactgctgcgccggcagggccgcggtcccacggtgatcgtgtcgccgctgctc
gccctgatgcgcaaccaggtcgcggccgccgagcgggcgggcgtccacgccgcgaccatc
aactccggcaacgtgacggaatgggcggcgatccacgagcggatcgcggcgggtgaggtc
gacgtcctcctcgtcagccccgaacgcctcaacaaccccgacttccgcgaccaggtcttg
ccctccctcgcccgcgacgccggattggtggtcgtcgacgaggcacactgcgtgtcggac
tggggtcacgacttccggcccgactaccgccgcatccgcaccctcgtcgccgaactcggc
gacgacatcccggtcctggcgacgaccgcgaccgccaacgaccgggtggtcgccgacatc
gccgcccagctcggtgtcggcgggagcagcgacctcggtggaagcagcagtgccggttcc
ggcggcacgctcgtactgcgcggcggtctcgaccgtccgtcgctgcacctgtcggtggtg
cggatcgacgaaccggcacgacgcgcggcgtggctcgcgcagcatctgaaggatctgccg
ggctcgggcatcgtgtacgcgctgacggtctccgccgcccgcgacctcgcggcgttgctc
accgaccacggctatgcagtggcggcatacaccggtcagaccgagccgaccgagcgtgaa
cagctcgaggccgatctcctcgacaacaaagtcaaggcgctcgtcgcgacctcggcgctc
ggcatgggcttcgacaagcccgacctcggcttcgtggtgcacctcggcgctccctcgtcc
ccgatctcctactaccagcaggtcgggcgcgcgggtcgctccaccgagcgcgccgaggtg
gttctgctccccggcccggaggaccgccggatctggcagtggttcgcctcggtcgccttc
ccggacgaggcgctcgtacgacgcgtgatcgcagcgctcgataccgaacggccggtatcg
acacccgccctcgaaccgcgggtcgacctcacgcgctcccgcctggagatggtcctcaag
gtcctcgacgtcgacggagcggtgaagagggtcaagggcggctggatcgccaccgggcag
ccctggacgtacgacgaggagcgctacgggcgcctcgaggaggcccgcgccgcggaacag
gaggcgatgctcgaatacgaacgcaccaccgaatgccgcatggtcttcctccgccgtcag
ctcgacgaccccgatctcgacacccggagccccggctgcgatcacaccgccggaggcccc
ggctgcggccggtgcgacaactgcatcggctcccggtgggagacgtccgtcggcgacgac
gaggtcgcccgcacccgcgcccggctcgaacgccccggtgtggatctgccgccgcgccgg
cagtggcccacggggatgtcgaccctcgggatcccgctgtcgggccggatcacggacggt
ccgcgccccgggcgcgtgctgggccggctgtcggatctgggatggggaccgcgactgcgc
gaactgctcgacggaccggaccgcgaagtgccgaaggcggtggtcgacgcgtcgatcgcg
gtgctcgccgcgtgggactgggaggaccggcccaccgccgtcatggccatggactccccc
acgcactccctgctcgtcgagtcacttgcgtcccgattggcacaaatcggacgattacga
gatctaggtgtattgcgacgccgaggcgggaatacggagccgacggcagcgaactcggca
tatcgggtcgccgcactgatcgacgcgtgggagcgacccgacaacctcgggtcgagtggt
ccgatccttctcatcgatgcggtgaccgacaccggctggacgttcacgatggcggcgaga
actctcgtcgcggcgggagccgacgcggtgttgccgtacgcactcgcgagcccgaagtaa
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