Rhodococcus sp. D-6: RBB84_05835
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Entry
RBB84_05835 CDS
T10622
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhox Rhodococcus sp. D-6
Brite
Enzymes [BR:
rhox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RBB84_05835 (hrpA)
Messenger RNA biogenesis [BR:
rhox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RBB84_05835 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
XBW05459
UniProt:
A0AAU7V0C9
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Position
complement(1227477..1231370)
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AA seq
1297 aa
AA seq
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MSISPAPNRRELRAALSEVSLRDVNRLRRRLDRARGGEALTEVAAEIETARARLASRASS
VPEIRYPEDLPVSQRKDDIAAAIRDHQVVVVAGETGSGKTTQIPKICLELGRGVRGLIGH
TQPRRIAARAVAERLAEELDTELGDAVGYTVRFNDQVTESTLVKLMTDGILLAEIQRDRL
LRQYDTLIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVIITSATIDPERFARHFADANGT
PAPIVEVSGRTYPVEVRYRPLTVEVGDTLVDRDPVDAVCEAVEELQCEGDGDILVFLSGE
REIRDTADALRDRKLLNTEILPLYGRLSAAEQYRVFAPHTGRRVVLSTNVAETSLTVPGI
RYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRAGRCGRVADGICIRLYSEDDFDGR
PEFTEPEILRTNLASVVLQMTALGLGDIEAFPFVEAPDPRAIRDGIALLEELGALEPAKK
GETPRLTATGREIARLPVDPRMARMIVEGHRNGCLREVLIIVAALSIQDVRERPTEFQQA
ADEKHARFAVEGSDFLAFLRLWDYLKEQRRELSSSRFRRLCRDEFLHWLRIREWQDLQGQ
LRQITVDMGWQTHHRDVNPDDVHKSLLAGLLSHIGLREGDKRDFLGARGARFAVFPGSSL
FKKPPRWVMAAELVETSRLWARTAARIEPEWVEKLAPHLVKRTYSEPHWSTRRESAMAYE
RVTLYGIPLVAQRPVPYGRIDPEVSRELFIRHALVQGEWRTQHKFFHDNRALLEDVEELE
HRARRRDIVVDDETLFDFYDQRVGPEAISARHFDTWWKKTRRQQPDLLTFTPDTVVNQDA
ASVLEGDYPDAWRQGEIQFPLTYQFEPGTEEDGVTARVPVALLANLKSVGFDWLVPGMRT
ELVTALIKTLPKHLRRQVVPAPDFAAAALASVTPRSEPLVNAMARELSRLGRCTIEPSDF
DTGALPDHLRMTFAAVDERGTVLGRSKSLAALRKKLAPRVDAEVSRAAAGTERPAAVVWT
AETLGNLPETVTREIGGRTVTGYPALVAEKDGVAVRVLSTPQAQQNATRQGLRALLLSSA
PTKAKAVTSGLTNMERLALGRNPDGSFDALIEDCRACAVDELIAAHGAPVRTPDEFEALA
STVRSHLPGRVARLLKAVVPVLSRAHEVGVLLDRSDGEAADDVREQLQSLLFPGFVTDLG
SRRIADLPRYLTAAAQRLEALPASAHRDAAGMDVLDRVYGAYDKLLARLPEERRAAPEVV
EIYWMIEELRVSLFAQGLGTRIPVSEKRVLKAIDGIR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcccccgccccgaatcgtcgcgaactgcgcgctgccctgtccgaggtctcc
ctccgcgacgtgaaccgcctccgtcgcaggctcgaccgggcgcggggcggcgaggcgctg
accgaggtcgccgccgagatcgagaccgcccgcgcccggctcgcgtcccgtgcgtcgtcg
gtcccggagatccgttatcccgaggacctaccggtctcgcagcgcaaggacgacatcgcc
gccgcgatccgcgaccaccaggtcgtagtggtcgccggtgagaccggttcgggcaagacg
acgcagatcccgaagatctgcctcgaactcgggcgcggggttcgcggcctgatcggccac
acccagccgcgccgtatcgccgcgcgcgccgtcgccgagcgactcgcggaggaactggac
accgagctcggcgacgccgtcggatacacggtgcgcttcaacgatcaggtcaccgagtcg
acactcgtcaagctgatgaccgacggcatcctcctcgccgagatccagcgcgaccgcctg
ctgcgccagtacgacacgctcatcatcgacgaggcgcacgagcgcagcctcaacatcgac
ttcctgctcggctacctcgcgcagctgcttccgcgtcgccccgacctgaaggtgatcatc
acctcggcgacgatcgaccccgaacgtttcgcgcgccacttcgccgacgcgaacggcacg
cctgcccccatcgtggaggtctccggccgcacctatcccgtcgaggtgcgttaccggccg
ctgaccgtcgaggtgggcgacacgctggtcgaccgcgaccccgtcgacgcggtgtgcgag
gccgtcgaggaactccagtgtgagggcgacggcgacatcctggtcttcctctccggcgag
cgcgagatccgcgacaccgccgacgcactgcgcgaccgcaagctcctcaacaccgagatc
ctcccgctctacggacgcctgtcggcggccgaacagtaccgggtcttcgcaccgcacacg
ggccggcgggtcgtgttgtccaccaacgtcgccgagacgtccctgacggttcccggcatc
cgctacgtcgtcgaccccggcaccgcacgtatctcgcggtactcggtgcggacgaaggtg
cagcgactgccgatcgagccgatctcgcaggcctcggcgcggcagcgcgccggacggtgc
ggtcgtgtcgccgacggcatctgcatccgtctgtactcggaggacgacttcgacggccgg
ccggagttcaccgagcccgagatcctgcgcaccaacctcgcgtcggtagtgttgcagatg
acggcgctcggtctcggcgacatcgaggcgttcccgttcgtggaggccccggatccccgc
gcgatccgcgacggcatcgctctgctcgaggagctcggcgcgctcgaacccgccaagaag
ggcgagacgccgcgcctgaccgcgacgggccgcgagatcgcccgcctgcccgtcgatccg
cgcatggcccgcatgatcgtcgagggccaccggaacggatgtctgcgcgaggtgctcatc
atcgtcgcggccctgtcgatccaggacgtgcgcgaacgcccgaccgagttccagcaggcc
gccgacgagaagcacgcccggttcgcggttgagggctcggacttcctggccttcctgcga
ttgtgggactacctgaaggagcaacggcgggaactgtcgtcgagcaggttccgcaggttg
tgccgcgacgagttcctgcactggttgcggatccgtgagtggcaggacctgcaggggcag
ctccgtcagatcactgtcgacatgggctggcagacgcaccaccgcgacgtgaatcccgac
gacgtccacaagtccctgcttgcaggtctgctgtcgcacatcggtcttcgcgagggcgac
aagcgcgacttcctcggtgcccgcggcgcacggttcgccgtcttcccgggatcgtcgttg
ttcaagaagcctccgcgctgggtcatggccgccgaactcgtggagacctcacggctgtgg
gcgcggacggccgcgcgcatcgaacccgaatgggtcgagaagctcgctccgcacctggtc
aagcgcacctactcggagccgcactggtcgacgcgccgcgagtcggcgatggcctacgaa
cgcgtcacgctctacggcatccccctggtcgcccagcgtcccgtgccgtacggacggatc
gatccggaggtctcgcgcgaactgttcatccgccacgccctcgtgcaaggcgaatggcgc
acgcagcacaagttcttccacgacaaccgggcgctgctcgaggacgtcgaggaactcgaa
caccgtgcgcgccggcgcgacatcgtcgtcgacgacgagaccctgttcgacttctacgac
cagcgggtcggcccggaggcgatctcggcccggcacttcgacacgtggtggaagaagacc
cgcaggcagcaacccgacctgctgacgttcacgccggacaccgtggtgaaccaggacgcc
gcctcggtgctcgagggcgactatccggacgcgtggcgccagggcgagatccagttcccc
ctcacctaccagttcgagccgggcacggaggaggacggtgtcaccgcccgcgtccccgtc
gcgctgctcgcgaacctcaagtccgtcggtttcgactggctggtacccgggatgcggacc
gagctggtcacggccctcatcaagaccctgccgaaacacctccggaggcaggtcgtaccg
gctcccgatttcgcagcggccgccctcgcctcggtgacgccgcgctccgaaccgctcgtc
aatgcgatggcccgcgagctgtcccggctcggccggtgcacgatcgagccctcggacttc
gataccggtgcgttgcccgaccatctgcggatgaccttcgccgcggtcgacgagcgcggc
accgtgctcggccgcagcaagagcctggcggccctgcggaagaagttggctccgcgggtc
gacgcggaggtctcgcgcgccgctgcgggcaccgaacgtcccgcggcggtggtgtggacg
gccgagaccctcgggaacctgccggagaccgtcacccgcgagatcggtggccggacggtc
accggttaccctgccctggtcgcggagaaggacggcgtcgcggtgcgcgtgctcagcaca
ccgcaggcccagcagaacgcgacgcgtcaggggttgcgtgccctgcttctgtcgtcggca
ccgacgaaggcgaaggccgtgacctcggggctgaccaacatggagcggctcgcgctcggg
cggaaccccgacggatcgttcgacgcgctgatcgaggactgccgtgcctgcgcggtggac
gaacttatcgccgcacacggcgcacccgtgcgcacgcccgacgagttcgaggcgctcgcg
tccacggtgcggtcacacctgccggggcgcgtggcccgtctgttgaaagcggttgtgccc
gtgctgtcccgcgcccacgaggtgggtgtgctcctcgatcggtcggacggcgaggctgcc
gacgacgtacgcgaacagctgcagtcgctgctgttccccggcttcgtcaccgatctgggg
tcgcggcggatcgccgacctgccgcgctatctcaccgcggccgcgcaacgcctggaggcg
ttgccggcgagtgcgcatcgcgatgccgcgggaatggatgtgctcgatcgcgtctacggc
gcctacgacaagctactcgcacgactgccggaggaacggcgcgccgctcccgaggtggtc
gagatctactggatgatcgaggaactgcgcgtgagcctgttcgcgcagggtctcggaacg
cggatcccagtgtcggagaagcgcgtcctgaaggcgatcgacgggatccggtag
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