Rhodococcus sp. D-6: RBB84_08195
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Entry
RBB84_08195 CDS
T10622
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rhox Rhodococcus sp. D-6
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhox03019
]
RBB84_08195
Enzymes [BR:
rhox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RBB84_08195
Messenger RNA biogenesis [BR:
rhox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RBB84_08195
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
HVO_A0261_N
AAA_22
DUF5848
TatA_B_E
nSTAND3
WSK
Motif
Other DBs
NCBI-ProteinID:
XBW05880
UniProt:
A0AAU7V116
LinkDB
All DBs
Position
1729183..1731939
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AA seq
918 aa
AA seq
DB search
MTGDPTPGPAGNDETGTAPLVPTPQLAEFATGLGFPLDPFQIEACRALEGGHSVLVCAPT
GAGKTVVGEFAVYLALQGGSKCFYTTPIKALSNQKYADLCARHGRDSVGLLTGDQSINSD
APVVVMTTEVLRNMIYASSTALIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLAS
LSATVSNAEEFGDWMTTVRGDTTVVVDEVRPIPLHQHMMLGSRIYDLFDRRADTDTAPTR
RRRDIVVNPELASAVRQRQSLSGMDRWGERGPRFRPPPRPEVIVRLDRDGLLPAITFVFS
RAGCDAAVQQCLRSGLHLTDETEAAEIRRIVDEHTRDLPRGDLEVLGYASWRTALERGIA
AHHAGMLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLEKLVKFNGDTHAELT
PGEYTQLTGRAGRRGIDVEGHAVVLWQPGIEPASVAGLASTRTFPLRSSFRPSYNMAVNL
IDAVGVERSRALLEMSFAQFQADKSVVGLKRGIDRNEATLAQLRDQLGGEGSEILDYLRL
RAELTDAERAHERRGKQDRRAAAVASLVTLRRGDIIAVPAGKHTGLAVVVLPDTDAGDPR
PQVVTADAWSGRLSAGDFPTPATVLGTLRLPRHVDHRTGRGRRDIASALRSKGLVPPRRP
KRSTSKGDTREIDALRRELKHHPARKHPDLDSLARAGERYHRLLRETQQQRRKAAAATDS
LARTFERIVALLTERGYLTEGDDPATTEAGERLARIYTESDLLVAECVRRRAWAGLSAAE
LAAVASAVIYESRTDEPVTVVGPTGSIRHALAETTRICDGLRADEIRHRLPPTREPDLGF
VTAAYTWASTASLTEALVAAEAAGKELSPGDFVRWCRQLIDLLDQIRTCADDPELARTAG
KAVGAVRRGVVAVDPTAE
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcgaccccactcccggccctgccggtaacgacgagaccggcaccgcgccgctc
gtccccaccccgcagctcgcggagttcgccaccggcctcgggttcccgctcgatccgttc
cagatcgaggcgtgccgcgccctcgagggtgggcattcggtgctggtgtgcgcccccacc
ggcgccggcaagaccgtcgtcggcgagttcgcggtgtatctggcgctgcagggcggttcc
aagtgcttctacaccaccccgatcaaggcgctgagcaaccagaagtacgccgatctgtgt
gcccggcacggccgggactcggtgggtctgctcaccggcgaccagtccatcaactccgat
gcgccggtggtggtgatgaccaccgaggtgctgcgcaacatgatctatgcgtcgtccacc
gccctgatcgggctcacccacgtggtgatggacgaggtgcacttcctcgccgaccggttc
cgcggcgcggtgtgggaggaggtgatcttgcacctgcccgaggacgtgcggctggcgtcg
ctgtcggcgaccgtgtcgaacgccgaggagttcggcgactggatgaccacggtgcgcggc
gacaccaccgtcgtcgtcgacgaggtgcggcccatcccgctgcaccagcacatgatgctc
ggctcccgtatctacgacctgttcgaccgccgcgccgacaccgacaccgccccgacccgg
cggcgccgcgacatcgtcgtcaacccggagctggcgtcggcggtgcggcaacggcagagt
ctgtccgggatggaccgctggggtgaacgtggcccccgcttccggccgccgccgcgcccg
gaggtcatcgtccgtctcgaccgcgacggtctgttgccggcgattaccttcgtgttcagc
cgcgccggttgcgacgccgcggtgcagcagtgcctgcgctcgggtctgcacctgaccgac
gagaccgaagccgccgagatccgccggatcgtcgacgagcacacccgggatctgccgcgc
ggcgacctcgaggtcctcggctacgcgtcgtggcgcaccgccctcgaacgcggcatcgcc
gcccaccacgccgggatgttgccggctttccggcacaccgtcgaagaactcttcgtgcgg
gggctggtgcgggcggtgttcgccaccgagaccctcgcgctgggcatcaacatgccagcc
cgcaccgtggtgctcgaaaagctcgtcaagttcaacggcgacacccacgccgaactgacc
cccggcgagtacacgcagctgaccggccgggccgggcggcgcggcatcgacgtcgagggc
cacgcggtggtgctgtggcagccgggcatcgaaccggcctcggtcgccgggctcgcctcc
acccgcaccttcccgctgcgcagctcgttccgcccgtcctacaacatggcggtcaacctc
atcgacgccgtcggggtggagcggtcgcgggcgctgctcgagatgtccttcgcccagttc
caggccgacaagtcggtggtcggtctcaaacgcggcatcgaccgcaacgaggccaccctc
gcacagctgcgcgaccagctcggcggtgagggcagcgagatcctcgactatctgcggttg
cgcgccgagctgaccgacgccgaacgcgcccacgagcggcgcggcaagcaggatcgccgg
gccgcggcggtggcgtcgctggtgaccctgcggcgcggtgacatcatcgccgtgcccgcc
ggtaaacacaccggcctggccgtggtggtgctgccggacaccgacgccggcgatccgcgg
ccgcaggtcgtcaccgccgacgcctggtccggtcgcctctccgccggggacttcccgacc
ccggcgacggtgctgggcacgctgcggctgccgcggcacgtcgatcaccgcaccggccgc
gggcgccgcgacatcgcgtcggcgttgcggtcgaagggcctcgtgccgccgcgccgtccc
aagcgcagcacgtccaagggcgacacccgcgagatcgacgcgttgcgccgcgaactcaag
caccatccggcccgcaagcaccccgatctggactcgctggcgcgtgccggggagcgctac
caccggttgctgcgcgaaacccagcagcagcgccgcaaggccgccgcggcgacggattcg
ctggcgcgaaccttcgagcggatcgtcgcgctgctcaccgaacgcggctatctcaccgag
ggtgacgatccggcgaccaccgaggcgggggagcggctcgcccgcatctacaccgaatcg
gatctgctggtcgccgaatgcgtgcgtcgccgtgcctgggcgggactgtccgccgccgaa
ctcgcggcggtcgcctcggcggtgatctacgagtcgcgcaccgacgaaccggtcaccgtc
gtcgggccgaccggctcgatccggcacgcgctggccgaaaccacccggatctgcgacggc
ttgcgggccgacgagatccggcaccggctgcccccgacccgcgaaccggatctgggtttc
gtcaccgccgcctacacctgggcgtcgaccgcgtcgctgaccgaggcgctcgtcgctgcg
gaggccgccggcaaggaactttcacccggagatttcgtgcggtggtgccggcagctgatc
gatctgctcgaccagatccgcacctgcgcggacgatccggaactcgcccgcaccgccggc
aaggcggtcggggcggtgcgtcgcggggtcgtcgccgtcgatcccaccgccgaatga
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