Rhodococcus sp. D-6: RBB84_13730
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Entry
RBB84_13730 CDS
T10622
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhox Rhodococcus sp. D-6
Pathway
rhox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBB84_13730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhox03021
]
RBB84_13730
03400 DNA repair and recombination proteins [BR:
rhox03400
]
RBB84_13730
Enzymes [BR:
rhox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBB84_13730
Transcription machinery [BR:
rhox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBB84_13730
DNA repair and recombination proteins [BR:
rhox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBB84_13730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XBW02397
UniProt:
A0AAU7UR91
LinkDB
All DBs
Position
complement(2970615..2974586)
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKSVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLKPKDLIVDEMI
YRELQDRYGEYFTGAMGAEAIQKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLVEDAPGAYK
AATADEPEQGVYSSPAEAQMAVDRGVLSVQAPIKVRLTQLRPPRDVENELFPEGWKYGQA
WTTHTTLGRVLFNELLPTNYAFVNDIMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISMADVLVPPEKKDILERYETQADAIQRQYDRGKLSEDERRDSLVKLWQEA
TEEVGQVMEAHYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTPRGIEMTI
AELARDATGQPTGELVRDAHIETSTYARTLATDAVDANGNVVVERGSDLGDPAIEALLEA
GIQKVKVRSVLTCDTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGEDITGGLPRVQELFEARVPKGKAPIADVSGRIRLEDDDRFYKITIIPDDGGEEV
VYDKLSKRQRLHVIRKADGTEGVLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLV
HEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERSEFEAANRRVVQ
EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG
KLIPAGTGINKYRNIEVQPTEEARAAAYAIPAYDDQYYSPDGFGQNTGAAVPLDDYGYSN
DYR
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaggacatc
cgtaactggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtccgccgtgagcgcatgggccacatcgagctcgccgctccg
gtgacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtcggtcgac
gacgagctgcgccacaacgagctctccactctcgaagccgagatggaggtcgagaagaag
tcggtcgccgaccagcgcgacgccgacctcgaggcccgcgcgcagaagctcgaagccgac
ctcgccgaactcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgtgcgcagcgcgagctcgaccgcctcgac
gagatctggacgaccttcacgaagctgaagccgaaggatctgatcgtcgacgagatgatc
taccgcgagctccaggaccgctacggcgagtacttcaccggtgccatgggtgccgaggcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggacagaagaagctccgtgctctcaagcgcctgaaggtcgtcgcg
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtcccggtaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtcatgaagcgtctc
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcaacgagcacccggttctgctgaaccgt
gctcccacgctgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcaccccctcgtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctcgccatgccgcgtctggac
atggtcacgggtctgttccacctgacccgtctggtcgaggacgcccccggcgcctacaag
gccgcgaccgccgacgagcccgagcagggcgtctactcgtcgccggccgaggcccagatg
gccgtcgaccgcggcgtgctgtcggtccaggctccgatcaaggtgcgcctgacccagctg
cgtccgccgcgcgacgtcgagaacgagctgttcccggagggctggaagtacggtcaggcg
tggaccacgcacacgaccctcggtcgcgtgctgttcaacgagctgctgccgacgaactac
gcgttcgtcaacgacatcatgccgaagaagcgccaggccgcgatcatcaacgatctggcc
gagcggtacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccatctcgatggcggacgtgctcgttccgccggag
aagaaggacatcctcgagcggtacgagacgcaggccgacgccatccagcggcagtacgac
cgaggcaagctctcggaggacgagcgtcgcgattcgctcgtcaagctgtggcaggaagcg
accgaagaggtcggtcaggtcatggaggcgcactacccggacgacaacccgatccccacg
atcgtcaagtccggtgctgcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgacgaacccgaagggcgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtcgccgagtacttcatcaacacgcacggcgcgcgtaagggtctggcc
gacaccgctctccgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtctcg
caggacgtcatcgtccgcgaggtcgactgcggcacgccgcgcggcatcgagatgaccatc
gccgagctcgcacgcgacgcgaccggtcagccgaccggtgagctcgtgcgcgacgctcac
atcgagaccagcacctacgcccgtacgctggcgacggacgcggtcgacgcgaacggcaac
gtcgtcgtcgagcgtggttccgacctcggcgacccggcgatcgaggcgctgctcgaggcc
ggcatccagaaggtcaaggtccgctcggtcctgacctgcgacaccggcaccggcgtctgc
gcgacctgctacggccgttcgatggcgacgggcaagctcgtcgacatcggcgaggccgtc
ggtatcgtcgccgcccagtcgatcggtgagcccggtacgcagctgacgatgcgtaccttc
caccagggtggcgtcggtgaggacatcaccggtggtctgccccgcgtccaggagctgttc
gaggcccgcgtccccaagggcaaggccccgatcgccgatgtctccggccgcatccgcctc
gaggacgacgatcgtttctacaagatcacgatcatccccgacgacggtggcgaggaggtc
gtgtacgacaagctgtccaagcgtcagcgtctgcacgtcatccgcaaggccgacggcacc
gagggcgtgctcgcggacggcgaccacgtggaggtcggtcagcagctcctcgagggctct
gccgatccgcacgaggtgctgcgcgtgatgggcccgcgtcaggttcaggtccacctggtc
cacgaggtccaggaggtctaccggagccagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtgcgccagatgctgcgtcgcgtgacgatcatcgactcgggctcgacggagttc
ctgcccggttcgctcgtcgagcgcagcgagttcgaggctgcgaaccgtcgtgtggtccag
gagggtggcgagccggctgccggccgtccggtcctcatgggcatcacgaaggcgtcgctg
gccaccgattcgtggctgtcggcggcgtccttccaggagaccactcgcgtgctcaccgac
gcggcgatcaactgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggc
aagctgatccccgccggtaccggtatcaacaagtaccggaacatcgaggtccagccgacc
gaggaggcccgcgcggccgcgtacgccatcccggcgtacgacgaccagtactactcgccg
gacggcttcggccagaacaccggcgctgcagtgccgctggacgactacggttactccaac
gactaccggtag
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