Rhodococcus sp. AH-ZY2: QNA09_04405
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Entry
QNA09_04405 CDS
T10477
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhoy Rhodococcus sp. AH-ZY2
Pathway
rhoy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QNA09_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoy03400
]
QNA09_04405
Enzymes [BR:
rhoy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
QNA09_04405
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
QNA09_04405
DNA repair and recombination proteins [BR:
rhoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QNA09_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
DUF7129
TMEM106_N
RNHCP
DUF5795
Motif
Other DBs
NCBI-ProteinID:
WML64057
UniProt:
A0AA51QQK0
LinkDB
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Position
complement(732145..733011)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGAVVGRIDVAALSVLQTADPPVTALQGRDVTGVSRFGKFLA
VDCAGLWLVVHLSRAGWLRWQDNPSPAPPKLGRGPLALRVHLFTPEAATPAFDLTEAGTR
KRLAVWIVDRPQQVPGIARLGPDALAVTADELAARLAGSTARLKTALTDQQVLAGIGNAY
SDEILHVARLSPFAPAGRLGDEQRQALYDAMRTVLLDAVTRSVGQDAARLKGEKRSGMRV
HARTGLPCPECGDTVREVAYAERSFQYCPTCQTGGRILADRRLSRLVK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggaagccctggcggtgttcctgcgcgagcacgccgtcggt
gccgtcgtcggccggatcgacgtggcggcgctcagcgtcctgcagaccgccgacccgccg
gtcaccgcgctgcagggccgcgacgtcaccggcgtgtcccgcttcgggaagttcctcgcg
gtcgactgcgccgggctgtggctcgtcgtgcacctctcacgcgccgggtggctgcgctgg
caggacaacccgtcgccggccccgccgaagctgggccgcggcccgctcgcgctgcgggta
catctgttcacccccgaggccgccacccccgccttcgacctcaccgaggccggcacccgc
aaacgtctggccgtgtggatcgtcgaccgcccgcagcaggtgcccggcatcgcccggctc
ggtcccgacgccctggccgtcaccgccgacgagctggccgcgcgactggccggcagcacc
gcccgcctgaagaccgccctcaccgaccagcaggtgctcgccgggatcggcaacgcctac
tccgacgagatcctgcacgtcgcccggctgtcgccgttcgcgccggcgggccggctcggc
gacgagcaacgacaggcgctgtacgacgcgatgcgcacggtgctgctcgacgccgtcacc
cgttccgtggggcaggacgccgcacggctcaaaggcgagaagcggtcggggatgcgggtc
cacgcccgcaccgggctgccctgcccggagtgcggcgacaccgtccgcgaggtcgcctac
gccgagcgctccttccagtactgccccacgtgccagaccggcggcaggatcctcgcggac
cggcggctgtcgcggctggtcaagtga
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