Rhodocytophaga rosea: GXP67_17210
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Entry
GXP67_17210 CDS
T06412
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhoz
Rhodocytophaga rosea
Pathway
rhoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXP67_17210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoz03019
]
GXP67_17210
03009 Ribosome biogenesis [BR:
rhoz03009
]
GXP67_17210
Enzymes [BR:
rhoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GXP67_17210
Messenger RNA biogenesis [BR:
rhoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXP67_17210
Ribosome biogenesis [BR:
rhoz03009
]
Prokaryotic type
rRNA helicases
GXP67_17210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Helicase_RecD
UTP25_NTPase-like
DUF6359
SWI2_SNF2
Hyccin
Motif
Other DBs
NCBI-ProteinID:
QHT68255
UniProt:
A0A6C0GJU0
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All DBs
Position
4167334..4169037
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AA seq
567 aa
AA seq
DB search
MKKLRFDELSLSEEIQKAVADMGFVEASPIQSEAIPYILDGRDVIGQAQTGTGKTAAFGI
PALEMVDTSQKNVQVLVLCPTRELAVQVADEFKKLSKYRKDIHSVAIYGGENIEKQITAL
RRGVHIVIGTPGRVMDHMERRTLNLENVRMMVLDEADEMLDMGFREDIESILEQVPDERQ
TIFFSATMSKPIMTLTKKYQVNPQLVKVVKNELTANNIEQLFYEVKPKAKVEVMARLIDM
YNLKLILVFCNTKMKVDELVEDLQIRGYQAEGLHGDLRQQQRNNVMAKFRAGATNILVAT
DVAARGIDVEDVDAVFNFDIPLDEEYYVHRIGRTGRAGKSGKAFSFVVGREIQRLREIQA
YTKVKIERGVIPSYEDIVGVKKAKFIEKIKETISEGGLDIFADMIDQLHHAGLSNEDIIL
GLIKMNMGVQKNEFADMDLSGDDRSERRERRGGERERFGDRGRREDRGGSRDGRSSGRGV
RENDRSTNASMVRLFINIGRDQKVRPGDIVGAIAGETGIAGNAIGSIDIYDKFSFVEVPK
TDVRKVLELMDNNSIKGKKVNIEIAKQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactaagatttgatgaactctctctgtccgaagaaatacaaaaagcagtggca
gatatggggttcgttgaggcttctccgatacaatcggaagccatcccctatattctcgac
gggagagatgtaatcggtcaggcgcaaaccggaacaggtaaaacagccgcttttggtatt
cccgccctggaaatggtagacaccagccagaaaaatgtgcaggtgctggttctttgccct
acccgtgaacttgctgttcaggtggcagatgaatttaaaaaactctccaaataccgcaaa
gacatacattcggtagccatttatggaggagaaaatattgaaaaacagattactgcgctc
agaagaggtgtacacattgtaattggtaccccaggccgggtaatggaccatatggaacgc
agaaccctgaatctggaaaacgtacgcatgatggttcttgatgaagccgacgaaatgctt
gatatgggattccgggaagatattgaaagtattctggaacaggtgccggatgagaggcag
actatcttcttttcagctacgatgtctaagcctattatgacattaaccaaaaaataccag
gtgaatccacagctggtaaaagtggtaaagaatgagctgacagctaataacattgagcaa
ttattctatgaggtgaaacctaaagccaaagtagaagtaatggcccgcctgatagatatg
tacaacctgaagttgatattagtgttctgtaacactaaaatgaaggtggatgaactggta
gaagacctacagatcagagggtatcaggcagagggtttacatggggacttacgccagcag
cagcggaacaatgtaatggctaaattccgggctggagccactaatattctggtagctacc
gacgtagccgcccgtggtattgatgtggaagatgtagatgctgtattcaattttgatatt
ccgttggatgaagaatactatgtacaccgcattggccggacagggcgtgccggtaaatcc
ggtaaagcattttcgtttgtggtaggccgtgaaattcagcgtttacgtgaaattcaggca
tataccaaagtaaaaatcgagcggggcgtaattccttcctatgaagatattgtaggggta
aaaaaagccaagttcatcgaaaaaatcaaagaaaccatatcagaaggtggcctggatata
tttgcagatatgatcgaccaattgcaccatgccggtttaagcaatgaggatattattctc
ggcctgatcaaaatgaatatgggcgttcagaaaaatgaatttgccgatatggacctgagc
ggtgatgaccgttcggaaagaagggaaagaagaggaggcgaacgcgaaagattcggagac
agaggccgccgggaagaccgtggtggtagccgggatggccgcagcagcggcagaggtgtc
cgtgaaaatgaccgttctaccaatgcttccatggttcggttattcattaacataggtcgt
gaccagaaagtacgtccgggagatattgtgggagcgatcgctggagaaactggtattgcc
ggaaatgccatcggcagtattgatatttacgataagttttcttttgtagaagttcctaaa
acggatgtacgcaaagtactggagctaatggataacaattcaatcaaaggcaaaaaggta
aatattgaaatagccaagcaataa
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