Rhodocytophaga rosea: GXP67_21695
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Entry
GXP67_21695 CDS
T06412
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhoz
Rhodocytophaga rosea
Pathway
rhoz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhoz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXP67_21695 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoz03021
]
GXP67_21695 (rpoB)
03400 DNA repair and recombination proteins [BR:
rhoz03400
]
GXP67_21695 (rpoB)
Enzymes [BR:
rhoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXP67_21695 (rpoB)
Transcription machinery [BR:
rhoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXP67_21695 (rpoB)
DNA repair and recombination proteins [BR:
rhoz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXP67_21695 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QHT69068
UniProt:
A0A6C0GM05
LinkDB
All DBs
Position
5245377..5249249
Genome browser
AA seq
1290 aa
AA seq
DB search
MANTKQSARVSFASIKSVIEYPDFLDIQLQSFMDFFQLETPAENRSQEGLFKVFSENFPI
SDSRENFKLEFIDYLIDPPKYSVDECIDRGLTYSVPLKAKLRLSCNDADNEDFETIEQEV
FLGNIPYMTTRGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIE
FATDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEVQASKDSLKKIIGRK
LAARVLRTWTEDFVDEDTGEVVSIDRNEVLLERDSIIHEEDLETILESGTKSVILHREDI
NVADYTIIYNTLQKDNSNSEKEAVEQIYRQLRNTEAPDEQTARDIIQNLFFSDKRYDLGE
VGRYRINKKLGLDIDTNVRVLTTEDIISIVKYLIGLINSKALVDDIDHLSNRRVRTVGEQ
LYSQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KVNSMGFIETPYRFVDEGKVNLEKPVIYLTAEEEDTHYIAQANATINDKGEFLYDKIKAR
FEGDFPVLEPDKVTYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLFRPEA
PIVGTGLEKRVAMDSRALVIAEENGVVDFVDSTKIVLRYDLTEDQKLVSFDQELKTYNLI
KFRRTNQDTCINLKPIVYKGDKVLKGQVLCEGYATNNGELALGRNLKVAFMPWQGYNFED
AIVISEKVVREDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRVG
SEVKEGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASMKAPPSLKGVVIDTKLF
SRPKKDKDLREKSKNEVKVLMKRYSKELTAVRTIMIDKLVALLDGKTSQGVRHKFGDEII
TKGVKFSRKNITDGLFPDKNIYRDESTYNVAEEVNLIADIILDNWTSDAHINDLLVKMVK
NYNKGRNEISGKFKRERFTLEVGDELPAGIVKLAKVYVAKKRKLKVGDKMAGRHGNKGVV
AKIVREEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVLGWAGLKLGKKYATPIFDGA
TEAEVSKELKTAGLPEFGRTYLFDGLSGTRFDQKVTVGVIYMLKLGHLVDDKMHARSIGP
YSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTVKSDDVIGRAKAYEAIVK
GENMPKPNIPESFNVLVHELRGLALEITLD
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaatacaaaacaatccgcccgtgtaagtttcgcctctataaaatctgtaatcgag
tatcctgattttcttgatatccaattgcagtcttttatggacttttttcagctggaaacc
cctgctgaaaaccgttcccaggaaggactttttaaggttttttccgagaactttcctatt
tcagactcacgggaaaatttcaaactcgaatttattgattacctgattgatcctcccaaa
tattctgttgacgaatgtatcgaccggggattaacctattcagttccattaaaagcaaaa
ttgagattatcctgcaacgatgcagataatgaagattttgaaacgattgagcaagaggtg
ttcttaggaaatattccctatatgaccacccgtggctcatttgttatcaatggcgctgag
cgtgtgattgtatctcagttgcaccgttcaccaggggtgttttttgcacaaagcaagcat
accaatggtactaaattatactcagccagaattattccattcaaaggttcctggattgag
tttgctacagacgtgaacaacgtaatgtatgcctatatcgaccggaaaaagaaatttccg
gtaactaccttgttacgtgccattggctttggttctgataaagatattctggatttgttt
ggattatctgaagaagtgcaggctagtaaagattctttgaaaaagatcattggacgtaaa
ttggctgcaagggtactcagaacctggacagaagattttgtggacgaggatactggtgaa
gttgtttctattgacagaaatgaagtgttgctggaacgggattccattatacatgaagaa
gatctggaaactattctggagtcgggtactaaatctgttattctgcaccgggaagatatc
aacgtagcagattatacgattatctacaacaccttacagaaagataattccaactctgag
aaagaagcggtagagcaaatctaccgtcagttgagaaatacggaagctcctgatgagcaa
acagccagagatattatccagaatttgttcttcagcgataagcgttacgatttaggtgaa
gttggccgctaccggatcaataagaaattaggtctggatattgataccaatgtacgggta
ttgacgactgaagatattatttcaatcgtgaagtatctgattggtctgattaactctaaa
gctttagtagatgatattgaccacttgagcaatcgccgggttcgtacagtaggagagcag
ttgtatagtcagtttggtgttggtctggcccgtatggcccgtaccatcaaagaaagaatg
aacgttcgtgataatgaagatttcaaaccagttgacttgattaacgcccgtacactttct
tctgtaatcaactctttcttcggtaccaaccagttatcccagtttatggatcaaaccaat
ccattggctgagattacccataaacgccgtatgtcggcattaggaccaggtggtttgtcg
cgcgaaagagcaggttttgaggtacgtgacgtacactatacccactatggccgtttgtgt
acaattgagacacctgaaggaccaaatattggtttgatttcttcattatgcgtacatgcg
aaagtaaacagcatgggctttatagaaacaccttaccgttttgtagatgaaggaaaagta
aatctggaaaaaccggttatatacttaactgctgaagaagaagatacccattacattgcc
caggcaaatgctacaatcaatgataaaggtgaattcttgtatgataaaattaaagcccgt
tttgaaggcgacttccctgtattggagccagacaaggtaacttacatggacgtagctcct
aaccagattgtttcggtagctgcttctctgattccattcctggagcatgatgatgctaac
cgtgcgctgatgggttcaaacatgcaacgccaggctgttccactattcaggccagaagct
ccgattgtaggaactggtttggagaaaagggtggcaatggattccagagcgctggtaatt
gctgaggaaaatggagtagttgattttgtggattctactaaaattgtattgcgctacgat
ctcacagaagaccagaaactggtaagcttcgatcaggaactcaaaacatataacctgatt
aaattcagaagaaccaaccaggatacctgtattaatttgaagcctattgtttacaaaggt
gacaaggtgttaaaaggacaggttctttgcgaaggatatgcgaccaataatggcgaatta
gctctagggcgtaacctgaaagtggcgtttatgccatggcagggatacaactttgaggat
gcgattgtaatctctgaaaaagtagttcgggaagatatcttcacttctattcacattgaa
gaatttgaactggaagtacgcgataccaaacgcggtgaagaagaacttacttctgaaatt
ccaaacgtaagtgaagaagcggttaaaaacctggatgagaatggaattatcagggtaggt
tctgaagtaaaagaaggagatattctgattggtaaaatcacaccaaaaggagaaactgac
ccaacgcctgaagagaaactattacgtgcgatttttggagataaagccggtgatgtgaaa
gatgcctctatgaaagcgccgccttcattgaaaggggtagtaattgataccaaactgttc
tctcgccctaaaaaggacaaagaccttcgtgaaaaatcaaagaacgaggtaaaagtgctc
atgaagcgctacagcaaggaacttactgctgtacgtaccattatgatagataaactggta
gcattgctggatggcaaaaccagccagggagtacgtcataaatttggagatgagattatt
acaaagggcgttaagtttagcagaaagaacattaccgatggtttattcccggataagaac
atttaccgggatgaaagcacctataatgtggctgaagaagtgaacctgattgccgacatc
attctggataactggacatccgatgcacatatcaatgatctgctcgtgaaaatggtgaaa
aactataacaaaggcagaaatgagatctcaggtaaattcaaacgggaacggtttacactg
gaagttggcgatgagttaccggcaggtatcgtaaaattagcaaaggtatatgttgctaaa
aaacgtaaactgaaagtaggagataaaatggcaggccgtcacggtaacaaaggggtagta
gctaagatagtgcgtgaagaagacatgccattcctggaagacggaacaccagtggatatt
gtgttgaatccgcttggcgtaccttcaaggatgaacctcggtcagatttatgaaactgta
ttaggatgggccggtctgaaactgggcaagaaatatgcaaccccgatttttgatggcgct
actgaagcagaagttagcaaagaactgaagacagcaggtttaccagagttcggacgtaca
tatctttttgatggattaagtggaacccggtttgaccagaaagtaacagtaggggtaatt
tacatgctgaaattaggtcacctggtagatgataagatgcacgcccgttctatcggaccg
tactcactcatcacgcaacagccgctgggtggtaaagcacaattcggtggtcagcgtttt
ggtgaaatggaggtatgggcactggaagcattcggtgcatcccacgtattgcaggaaatt
ctgactgttaaatctgatgacgtaataggcagagcaaaagcatacgaagccattgtgaaa
ggtgaaaatatgccgaaaccaaacattcctgaatcatttaatgttctggttcatgagtta
agaggtctggcgctggaaattacgttagattaa
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integrated database retrieval system
