Rhodocytophaga rosea: GXP67_25065
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Entry
GXP67_25065 CDS
T06412
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhoz
Rhodocytophaga rosea
Pathway
rhoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXP67_25065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoz03019
]
GXP67_25065
03400 DNA repair and recombination proteins [BR:
rhoz03400
]
GXP67_25065
Enzymes [BR:
rhoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXP67_25065
Messenger RNA biogenesis [BR:
rhoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXP67_25065
DNA repair and recombination proteins [BR:
rhoz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GXP67_25065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
GMT-wHTH
HTH_41
Cas3-like_C_2
PadR
DUF5805
DUF3891
Motif
Other DBs
NCBI-ProteinID:
QHT69683
UniProt:
A0A6C0GPZ0
LinkDB
All DBs
Position
complement(6058580..6060499)
Genome browser
AA seq
639 aa
AA seq
DB search
MSQIHDILKRYWGYNAFRPLQEDIIQSVLLKQDTLALLPTGGGKSICFQVPALAVEGICI
VISPLIALMKDQVEQLKKRNIPAVALYSGLTRREIDIILDNCVFNHYKFLYVSPERIQTE
LFIERVKRMKVSLLAIDEAHCISQWGYDFRPPYLEIIKLRDILPQIPVIALTATATKEVK
ADILDKLAFRQPKVYQKSFARENLSYSAFQEEDKERKMLTILQNVPGSAVVYTRSRKRTQ
QLAEWLLKTGISADFYHAGLNNDQRSYKQDAWINNHIRVIVATNAFGMGIDKPDVRTVIH
MDLPDSLEAYYQEAGRAGRDEKKAYAVALFNKSDLEDLKHRVEQAFPPVDFIRRVYQSLA
NYYQIAAGSGYLANYNFELEDFCKTYKLQAGETYHALKRLEDEGFIQLNEAFFSPSKVFF
TIDKKQLYEFQVANASYDPLIKMLLRLYGGELFTSFMIISEQALARQLQASRSDIEKMLT
MLHSLQVLIYDKQKDKPQLTFTTVRFNTQDLPIQARHLEIRKQQELQKIGAVIDYVTHQN
RCRTLLLLAYFDEISELECGVCDNCIEKKKQKDFKDYYYQHRKQIMEALSSQEISVQQLL
HRIKPKDEKALIDTLREMTNTGEIRYNAKGNIYRVQPNS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgagccagatacatgatattttaaaaaggtactggggttataatgccttccgcccttta
caggaagatatcatccagtcggtactgcttaagcaggataccctggccttactgcctact
ggcggcggaaaatctatttgttttcaggtacctgctttggctgtagaaggcatttgtatt
gtgatttctcccttgattgctctcatgaaagaccaggtagagcaattaaagaaaagaaat
attccggctgttgccttgtattctggacttacccgaagggaaatagatattattctggac
aattgtgtatttaatcattacaaattcctgtatgtttccccggagcgtatacaaacagag
ctttttatcgaacgggtaaaacgcatgaaggtaagcttactggcaatagatgaggcacat
tgcatatctcaatggggttacgatttcaggccaccttacctggaaattattaaattacgg
gacattttgccgcagattccagtaatagctcttactgcaacagccaccaaagaggtaaaa
gcagacatactggataagttagctttccgccagccaaaagtttatcagaaaagttttgcc
agggaaaatttatcttattctgcttttcaggaagaagataaagagcggaagatgcttact
attctgcaaaatgtaccaggttcggcagtagtatataccagaagccgcaagcgcacacaa
caactggctgaatggctgttgaaaaccggaatctctgccgatttttatcatgccggccta
aacaatgaccagcgctcctataaacaggatgcctggattaataaccacatccgggtaatt
gttgccactaacgcctttggaatgggaattgacaaaccagatgtccgtacggttattcat
atggatctgccagatagcctggaagcctactaccaggaagcaggccgggccggaagggat
gaaaaaaaagcatatgcggtagcgttattcaacaaaagtgacctggaagatttaaaacac
agagtagaacaagcttttccgcctgttgatttcatccgaagggtataccagtcactggct
aattattaccagatcgctgccggaagtggttatctggctaattataacttcgaactggaa
gatttttgtaaaacctataaactacaggcaggcgaaacctatcatgccttaaaacgcctg
gaagatgaaggatttattcaattgaatgaggcttttttcagcccctccaaggtatttttt
acgatagataaaaaacaactgtatgaattccaggtagctaatgccagttatgatccgctc
ataaaaatgctgctccggctatatggtggcgaattgttcaccagctttatgatcatttcc
gagcaagcacttgcccgtcaattacaagctagccgttcggatatcgaaaaaatgctgacg
atgttgcattcgcttcaggtattgatttatgataaacaaaaggacaaaccccagcttact
tttaccactgtccggtttaatacacaggatcttccaattcaagcccgtcacctggaaata
cgtaagcaacaggaattacagaagattggcgctgtgattgattatgttacacaccagaac
aggtgtcgtaccctacttctattggcttattttgatgagatttctgaactggaatgtggt
gtttgtgataattgtattgagaagaaaaagcaaaaagattttaaagactattattaccag
caccgtaagcaaattatggaagcactttccagccaggaaattagtgtgcagcaacttctc
caccggataaaacctaaggatgaaaaagcactaatagataccttgcgggaaatgacaaat
acaggtgagatcagatataatgcgaaaggaaatatctaccgggtacagcctaattcataa
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