Rhodobacter xanthinilyticus: LPB142_01110
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Entry
LPB142_01110 CDS
T04631
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB142_01110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhp03021
]
LPB142_01110
03019 Messenger RNA biogenesis [BR:
rhp03019
]
LPB142_01110
Transcription machinery [BR:
rhp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LPB142_01110
Messenger RNA biogenesis [BR:
rhp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LPB142_01110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
OB_RNB
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AOZ68084
UniProt:
A0A1D9M892
LinkDB
All DBs
Position
complement(215464..216735)
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AA seq
423 aa
AA seq
DB search
MSTERLNLADLKAKSPKELLALAEEWEIENASTMRKGEMMFSILKESAEDDIVIGGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPEMIRQYSLRTGDTVEGIIRAPGENERYFALTG
VEKINFEDPERARHKVSFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVAPIGKGQRSL
IVAPPRTGKTVLLQNIAHSIEVNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ATRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEDLLTDQKDLQKTYLLRRILNPMGTTDAIEFLISKLKQTKTNGEFFDS
MNG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggaacgtctgaatctcgccgacctcaaggcgaagagccccaaggaactcctc
gcgctggctgaggaatgggagatcgaaaacgcctcgacgatgcgcaagggcgagatgatg
ttctcgatcctgaaggaaagcgccgaggacgatatcgtgatcggcggcgatggcgtgctc
gaggttctgcaagacgggttcggcttcctgcgctcgcccgaggcgaactatctgccgggc
cccgatgacatctatgtctcgcccgagatgatccgccaatacagcctgcgcaccggcgat
acggtcgaggggatcatccgcgcgccgggggaaaatgagcgctatttcgcgctgactggg
gtcgagaagatcaacttcgaggacccggagcgcgcgcgccacaaggtcagcttcgacaac
ctgacgccgctttaccccgatgagcggctgaagatggagatcgaggatccgacgatcaag
gaccgttcggcgcggatcatcgacctcgtggcgccgatcggcaagggccagcggagcttg
atcgtggcgccgccgcgcaccggtaagacggtgctcttgcaaaacatcgcacattcgatc
gaggtcaatcacccggaatgctatctgatcgttctgctgatcgacgagcgcccggaagag
gtcactgacatgcagcgctcggtgaagggcgaggtgatttcctcgaccttcgacgagccg
gcgacgcggcacgttgcggtcgcggaaatggtgatcgagaaggccaagcggctcgttgag
cacaagcgcgacgtggtgatcttgctcgattcgatcacgcgtctcgggcgggcttacaac
accgtggtgccgagctcgggcaaggtgctgaccggcggtgtggatgcgaacgcgctgcaa
cggccgaagcggttcttcggcgcggcgcggaacatcgaagagggcggctcgctgaccatc
atcgcgaccgcgctgatcgataccggctcgcggatggacgaggtgattttcgaggaattc
aagggcaccggcaacagcgagatcgtgctcgaccgcaaggtcgccgacaagcgcgtgttc
ccggcgatggatattctcaaatcggggacgcggaaggaagacctgctcaccgatcagaag
gatctgcaaaagacctatctgctgcgccgcatcctcaacccgatgggcacgaccgatgcg
atcgaattcctgatctcgaagctcaagcagacgaagaccaacggcgaattcttcgactcg
atgaacggctga
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