Rhodobacter xanthinilyticus: LPB142_01400
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Entry
LPB142_01400 CDS
T04631
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rhp
Rhodobacter xanthinilyticus
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhp03016
]
LPB142_01400
Enzymes [BR:
rhp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LPB142_01400
Transfer RNA biogenesis [BR:
rhp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LPB142_01400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
TPR_4
Motif
Other DBs
NCBI-ProteinID:
AOZ68128
UniProt:
A0A1D9M8J0
LinkDB
All DBs
Position
279808..280422
Genome browser
AA seq
204 aa
AA seq
DB search
MAIHLHRNDLPEGLDLGPIVAIDTETMGLDPRRDRLCLVQLSAGDGSAHLVQIARGQTEA
PRLCRLLADPGTEKLFHFARFDIAALYNAFGVVTAPVFCTKIASKMVRTYTDRQGLKYLL
QELVGVDISKQQQTSDWGAPELTQAQLDYAASDVLYLHKLRAVLAERLAREGRTDLAQAC
FDFLPTRARLDLLGWEEPNDIFHH
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtggccattcatctgcatcgcaacgacctgcccgagggcctcgatctcgggcccatcgtc
gccatcgacaccgagaccatgggcctcgatccgcgccgcgaccggctctgcctcgtgcag
ctctcggcgggcgacggctcggcccatctcgtgcagatcgcccgcggccagaccgaggcg
ccgcgcctgtgccggttgctcgccgatccgggcaccgaaaagctcttccatttcgcccga
ttcgatatcgccgcgctctacaacgccttcggggtggtcaccgcgccggtcttctgcacc
aagatcgcctcgaagatggtgcgcacctataccgaccggcaggggctgaaatatctcctg
caagagctcgtcggcgtcgatatctcgaaacagcagcagacctcggattggggcgcgccc
gagctgacccaggcgcagctcgactatgccgcctccgatgtgctgtatctccacaagctg
cgcgcggttctggccgagcggctggcgcgcgaggggcgcaccgatctggcgcaggcctgc
ttcgatttcctgcccacccgggcgcggctcgatctgctcggctgggaggagccaaatgac
atcttccaccactga
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