Rhodobacter xanthinilyticus: LPB142_04325
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Entry
LPB142_04325 CDS
T04631
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhp
Rhodobacter xanthinilyticus
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhp03032
]
LPB142_04325
03400 DNA repair and recombination proteins [BR:
rhp03400
]
LPB142_04325
Enzymes [BR:
rhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LPB142_04325
DNA replication proteins [BR:
rhp03032
]
Prokaryotic type
DNA Topoisomerases
LPB142_04325
DNA repair and recombination proteins [BR:
rhp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LPB142_04325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AOZ70879
UniProt:
A0A1D9MGJ5
LinkDB
All DBs
Position
complement(867928..870546)
Genome browser
AA seq
872 aa
AA seq
DB search
MAVVVVESPAKAKTINKYLGSDYTVLASFGHVRDLPPKDGSVDPEQDFAMKWEIASDSKK
HIKAITDALADDDELILATDPDREGEAISWHLEQALEKKLKGKKVSRVTFNAITKSAITE
AMKHPRKVDGPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVEREM
EIEAFRAREYWTVTAELTTPRGQVFTARLTVLGGKKLDKFDLATATDAELAVQAVSSRAL
TVKSVEAKPATRNPYPPFMTSTLQQEASRKFGMGAKACMSAAQRLYEAGYITYMRTDGID
MAPEAVMAARDAIKARFGANYVPASPRMYKNKAKNAQEAHECIRPTDMNLGPEKLKLADD
QWKLYDLIWKRTIASQMAAAVMERTTVDVGSADGEVELRATGQVVTFDGFLKVYDQGRDD
DEGEDGARLPQIMQGEAADKRAITPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIV
TTIQDRGYVRKDKNRLIPEDTGRLVTAFLSNYFRRYVEYDFTADLEDQLDDISAGDRDYK
EVLARFWRDFSAALGETADLRIGEVLDKIDEVLSPHLYPARPDGADPRECPVCHAGRLHL
KTARSGGAFIGCGNYPECRYTRPLSAPGDDETAALDGKVLGHDEGQAITLRIGRFGPYVQ
KGEPTEAVPKPPRSSLPKGWAPESIDLERALQLLSLPRQIGPHPEDGEPVETNLGRFGPY
VKWGKTYANLPDAEEVFTIGMNRAVELLALKLARGPGRGAATQPLKELGEHPEGGAVQVM
PGRYGPYVKWGKVNATLPKDLAPEEVTLEAALPLLEAKATKGGKKKAAPKKAAAKPAAEK
TAAKKPAAKKAPAKKPAAKKAPAKKAAPDAEG
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgttgtcgttgaatctccggctaaggccaagacaatcaacaaatatcttggt
tccgattacacggttctggcctcgttcgggcatgtgcgcgacctgccgcccaaggatggt
tcggtcgaccccgagcaggatttcgcgatgaaatgggagatcgcgagcgattcgaagaaa
cacatcaaggcgattaccgatgcgctggccgatgacgatgagttgatcctcgccaccgac
cctgatcgcgagggggaggcgatttcgtggcacctcgagcaggcgctcgagaagaaattg
aagggcaagaaggtcagccgcgtgaccttcaacgcgatcaccaaatcggcgatcaccgag
gcgatgaaacacccgcgcaaggtcgacggcccgctcgtcgaggcttatctcgcgcgccgc
gcgctcgattatctggtggggttcaacctctcgccggtgctctggcgcaagctgccgggg
gcgaaatcggcggggcgggtgcaatcggtctgcctgcggctgatcgtcgagcgcgagatg
gagatcgaggccttcagggcgcgcgaatactggacggtgacggccgagctcaccacgccc
cgcggccaggtcttcaccgcgcggctgacggttctgggcggcaagaagctcgacaagttc
gacctcgcgaccgcgaccgacgccgagctcgcggtgcaggcggtctcctcgcgcgcgctc
accgtgaaatcggtcgaggcgaaacccgccacccgcaacccctacccgccgttcatgacc
tcgaccctgcaacaggaggcgagccgcaagttcggcatgggcgccaaggcctgcatgtcg
gccgcgcaacggctctacgaggcgggctacatcacctatatgcggaccgacggcatcgac
atggcgcccgaggcggtgatggccgcgcgcgacgcgatcaaggcgcggttcggcgcgaat
tacgtccccgcctcgccgcggatgtacaagaacaaggccaagaacgcgcaggaagcgcac
gaatgtatccgcccgaccgacatgaatctcgggccggagaagctcaagctcgccgatgat
caatggaagctctatgatctgatctggaagcgcacgatcgcgagccagatggcggcggcg
gtgatggagcgcacgacggtcgatgtgggctccgccgatggggaggtcgagctgcgcgcg
accggccaggtggtcactttcgacggcttcctcaaggtctatgatcagggccgcgacgac
gacgagggcgaggacggcgcgcgcctgccgcagatcatgcagggcgaggcggccgacaaa
cgcgccatcacccccgagcagcatttcacccagccgccgccgcgctacaccgaggcgacg
ctcgtcaagcgcatggaagagctcggcatcgggcgcccctcgacctatgcctcgatcgtc
accacgatccaggaccgcggctatgtccgcaaggacaagaaccggctgatccccgaggat
accgggcggctcgtcaccgccttcctgagcaattatttccgccgctatgtggaatatgat
ttcaccgccgatctcgaggatcagctcgatgacatctcggcgggcgaccgcgattacaag
gaagttctcgcccggttctggcgcgatttctccgcagcgctcggcgagaccgccgatctg
cgcatcggcgaagtccttgacaagattgatgaagttctctcgccccatctctaccccgcg
cgccccgatggcgcggacccgcgcgaatgcccggtctgccacgccggccggctgcatctg
aagaccgcgcgctcgggcggggccttcatcggctgcggcaactaccccgaatgccgctac
acccgcccgctctcggcgcccggcgatgacgagaccgccgcgctcgacggcaaggtgctc
ggccatgacgagggccaggcgatcacgctgcgcatcggccgcttcggcccctatgtgcaa
aagggcgagcccaccgaggcggtgccgaaaccgccgcgctcgagcctgccgaagggctgg
gcgccggagtcgatcgaccttgagcgcgcgctgcaactcctgagcctgccgcgccagatc
ggcccccaccccgaggatggcgaacccgtcgagaccaacctcggccgcttcggcccctat
gtgaaatggggcaagacctatgccaacctccccgatgccgaggaggtcttcaccatcggc
atgaaccgcgcagtggagcttctggcgctcaaactcgcccgcgggcccgggcgcggggcg
gccacgcaaccgctcaaggagctcggcgagcaccccgagggcggcgcggtgcaggtgatg
cccggccgctacgggccctatgtcaaatggggcaaggtgaatgcgacgctgccgaaggac
ctcgcccccgaggaggtgacgctcgaagccgcgctgccgcttctcgaggccaaggccacc
aagggcggcaagaagaaagccgcgccgaagaaggccgccgccaagcccgctgccgagaag
acggccgcgaagaaaccggcggcgaaaaaggcaccggccaagaagccggccgcgaagaaa
gcccccgccaagaaggccgcccccgacgccgagggctga
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