Rhodobacter xanthinilyticus: LPB142_04610
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Entry
LPB142_04610 CDS
T04631
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB142_04610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhp03019
]
LPB142_04610
Enzymes [BR:
rhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB142_04610
Messenger RNA biogenesis [BR:
rhp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB142_04610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_19
DEDD_Tnp_IS110
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOZ68685
UniProt:
A0A1D9M9Z0
LinkDB
All DBs
Position
complement(936755..938104)
Genome browser
AA seq
449 aa
AA seq
DB search
MRRNPKDNPLENFENLGLAPILLRNLAGLGLLKPTPIQAQAIPQIVKGRDILGLAQTGTG
KTAAFGLPMMTRIIAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYADGAPVRIQRVVG
GQSIFLQTEKLAKGVDVLIATPGRLLDLLERRALVLSETRYLVLDEADQMLDIGFIHALR
KIAKLIPAERQTLLFSATMPKLMEELAASYLTDPVRVQVSAPGKAAEKIEQGVHFTTQGE
KATLLAEYLGGHKGELAVVFNRTKHGSDKLAKLLDKWGFSVTAIHGNKSQNQRERALNAF
RAGEVEVLVATDVAARGLDIPLVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCAP
LEMGDLRAIEKAMGDGIPVIGGLPHEETPAQKPGGRPGQKPGRKPQGRGRGQKPASEGGH
AAPKPERAARPAGGQQAPRRPAAKKTPRG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgcaacccgaaagacaatccattggaaaattttgaaaatctcggccttgcgccg
atcctgctgcgcaatctcgcggggctcggcctgctcaagcccacgccgattcaggcgcag
gcgatcccgcagatcgtgaaggggcgcgatattctcggcctcgcgcagaccggcaccggc
aagaccgcggcctttggtctgccgatgatgacgcggatcatcgcctatggcaaacgcccc
gcgccgaagacggtgcgcgcgctggttctggcgccgacgcgcgagcttgcgacgcagatc
catgacaacctcgccgcctatgccgatggcgcgccggtgcggatccagcgcgtggtcggc
ggccagtcgatcttcctgcagaccgaaaagctcgccaagggcgtcgatgtgctgatcgcg
acgcccgggcggctgctcgacctgctcgagcggcgcgcgctcgtgctctcggaaacgcgc
tacctcgtgctcgacgaggccgaccagatgctcgacatcggcttcatccacgcgctgcgc
aagatcgccaagctgatcccggcggagcgccagacgctcttgttctcggcgaccatgccg
aagctgatggaggagctcgccgcgagctacctcaccgacccggtgcgggtgcaggtctcg
gcgcccggcaaggcggcggaaaagatcgaacagggcgtgcatttcaccacccagggcgag
aaggcgacgctgctggcggaatatctgggcggccacaagggcgagctggcggtggtcttc
aaccgcaccaagcatggctcggacaaactcgccaagctcttggataaatggggtttttcg
gtcactgcgatccatggcaacaagagccagaaccaacgcgagcgggcgctgaacgcgttc
cgcgcgggcgaggtcgaggtgctggtggcgaccgatgtggccgcgcgcgggctcgatatc
ccgcttgttgcgcatgtctataactacgacctgccgaatgtgcccgagaactatgtccac
cggatcggccgcaccgcgcgggcgggccgcgacgggcgggcggtggcgttctgcgcgccg
ctcgagatgggcgatctgcgggcgatcgagaaggcgatgggcgacgggatcccggtgatc
ggcggcctgccgcatgaggaaacgccggcgcagaagccgggcgggcgaccgggtcagaag
ccgggccgcaagccgcagggccgtgggcgggggcagaaaccggcctcggagggcggccat
gccgcgccgaagcccgagcgcgccgcgcgccccgcgggcggccagcaggcgccgcgccgc
cccgccgccaagaaaaccccacgcggttaa
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