Rhodobacter xanthinilyticus: LPB142_09460
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Entry
LPB142_09460 CDS
T04631
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB142_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhp03400
]
LPB142_09460
Enzymes [BR:
rhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB142_09460
DNA repair and recombination proteins [BR:
rhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB142_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
AAA_30
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AOZ69510
UniProt:
A0A1D9MCI3
LinkDB
All DBs
Position
complement(1926564..1930013)
Genome browser
AA seq
1149 aa
AA seq
DB search
MAHFLYSGAPEGFDARLIAQELAKGQPVIHVARDDRRLEAMRAALAFFAPEAVVLNFPGW
DCLPYDRVSPNPDISATRMATLAALSAGVPGPFVLLTTLSAAMQRVPARATVAGASFTAR
VGGRIDEARLRQFLARMGFSPASTVSEPGDYAVRGGIIDIFPPGESGPVRLDLFGDVLDG
ARRFDPVSQRTTEKLTAIELAPVSEVILDEASISRFRQNYRVEFGAGGAEDPLYEAVSAG
RKHAGMEHWLGFFHDRLETIFDYLPEAAVLLDDQTGPQRISRWEGIADQYDTRREAMSRR
DRLDSVYKPAPPELLYLDEAAWGAALAPRRVLQLQILRAPPGPGVVDAGGRIGRNFAPER
QLENVSLFGALKDHLLKQLALGPVVVASWSEGARERLKGLLEDEGLSGARAIRDAREIGP
GVNLAVWPLDAGFEVERAAGGLTVISEQDVLGDRLVSRPKKKRKAENFLTEAQSLTPGDL
VVHVDHGVGRYKGLETVSALGAPLDCVLLEYAGGDRLYLPVVNIELLSRYGHEEGLLDKL
GGGAWQAKKARLKERIRQIADKLMRIAAERLLRAAPILEAPHHEWEAFAARFPYSETEDQ
LSAIDDVVSDLGTGRPMDRLVVGDVGFGKTEVAMRAAFIAAVSGVQVAVIAPTTLLARQH
YKTFAERFRGTAVNVRPLSRFVSAKAAAETRAGLAEGSVDIVIGTHAVLAKAVKFRNLGL
LIIDEEQHFGVNHKERLKEMRSEIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDTVTIREALLRERFRGGQSFYVVPRITDLAEVEEFLKTHVPEVSYMVAHGQM
AAGELDERMNAFYDGKADVLLATTIVESGLDIPTANTMIVHRADMFGLSQLYQIRGRVGR
SKLRAYCYLTTKPRMPLTPQATKRLRLLGSLDSLGAGFNLASQDLDLRGAGNLLGEEQSG
HIKEVGYELYQAMLEETIAKLKSGELTEMAEDGEWSPQINLGVPVMIPEAYVPDLDVRLG
LYRRLSGLTTKVELEGFAAELIDRFGELPKEVNTLLLVVRIKAMCKRAHIARMDAGPKGA
TVQFHADKFPNPAGLVEFLQAQRGQAKIAGNKVVVQRDWSSDAEKIKGAFAIAKDLAEKV
IEAKKAAKS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggcgcattttctctattccggcgcgcccgaggggtttgatgcgcggctgatcgcgcag
gaattggccaagggccagccggtgatccatgtcgcgcgcgatgatcgccggctcgaggcg
atgcgggcggccttggcgtttttcgcgcccgaggcggtggtgctgaattttccgggctgg
gattgtctgccctatgaccgggtctcgcccaaccccgatatttcggcgacccggatggcg
accttggccgcgctcagcgcgggcgtgccggggccgtttgtgctcttgaccacgctctcg
gccgcgatgcagcgcgtgcccgcgcgcgccaccgtcgcgggggcgagcttcaccgcgcgc
gtcggcgggcggatcgacgaggcgcggctgcgccagtttctcgcgcggatgggcttctcg
ccggcctcgaccgtctccgagcccggcgattacgcggtgcgcggcggcatcatcgacatt
ttcccgcccggcgaatccggcccggtgcggcttgatctcttcggcgatgtgctcgacggg
gcgcgccgcttcgacccggtgagccagcgcaccaccgaaaagctcaccgcgatcgagctc
gccccggtcagcgaggtgatcctcgacgaggcctcgatcagccggtttcgccagaattac
cgggtcgaattcggcgcgggcggcgcggaggatccgctttacgaggcggtctcggcgggg
cgcaaacatgcggggatggagcattggctgggcttcttccatgaccggctcgagacgatt
ttcgactatctccccgaggcggcggtgctcttggatgaccagaccggcccgcagcggatc
tcgcgctgggaaggcatcgccgatcaatatgatacgcgccgcgaggcgatgagccggcgc
gaccggctcgacagcgtctacaaacccgcgccgcccgagcttctctatctcgacgaggcg
gcctggggggcggcgctcgcgccccggcgggtgttgcagctccagatcctgcgcgccccg
cccgggcccggggtcgtcgatgcgggcgggcgcatcgggcgcaatttcgcgcccgagcgg
cagcttgaaaatgtgagccttttcggggcgttgaaggatcatcttctcaaacagctcgcg
cttggcccggtggtcgtcgcgagctggtcggagggcgcgcgcgagcgtctgaaggggctt
ttggaggatgaggggctgagcggcgcgcgcgccattcgcgacgcgcgcgagatcgggccc
ggcgtgaacctcgcggtctggccgctcgacgcgggcttcgaggtcgagcgcgcggcgggc
gggctcaccgtcatctccgagcaggatgtgctcggcgaccggctcgtcagccgcccgaag
aaaaagcgcaaggcggagaatttcctgaccgaggcgcagagcctcacgcccggcgatctc
gtcgtccatgtcgatcacggggtcgggcgctacaaggggctcgagacggtctcggcgctc
ggcgcgccgctcgattgtgtgcttttggaatatgcgggcggcgatcggctctatctgccg
gtggtgaatatcgagcttctgagccgctatggccatgaggaggggctgcttgacaagctc
ggcggcggcgcctggcaggcgaagaaggcgcggctcaaggagcggatccgccagatcgcc
gataaactcatgcggatcgcggccgagcggctgttgcgcgcagccccgatcctcgaggcg
ccgcatcacgaatgggaggccttcgccgcgcgcttcccctatagcgagaccgaggaccag
ctcagcgcgatcgacgatgtggtgagcgatctgggcacggggcggccgatggaccggctc
gtggtgggcgatgtgggctttggcaagaccgaggtcgcgatgcgcgcggctttcatcgcg
gcggtctcgggggtgcaggtggcggtgatcgcgccgaccacgctgctcgcgcgccagcat
tacaagaccttcgccgagcgcttccgcggcaccgcggtcaatgtccggccgctgtcgcgc
tttgtctcggccaaagccgccgccgagacccgcgcgggcctcgccgagggctcggtcgat
atcgtgatcggcacccatgcggtgctcgccaaggcggtgaaattccgcaacctcggcctg
ctgatcatcgacgaggagcagcatttcggcgtcaaccacaaggagcggctgaaagagatg
cgctccgagatccatgtgctgacgctcaccgcgacgccgatcccgcggacgctgcaactg
tcgctgaccggtgtgcgggatctctcgatcatcggcacgccgccggtcgaccggctcgcg
atccgcacctatgtgagcgagttcgataccgtcacgatccgcgaggcgctcttgcgcgaa
cgcttccgcggcgggcagagcttctatgtggtgccgcggatcaccgatctcgccgaggtc
gaggagttcctgaaaacccatgtgcccgaggtgagctatatggtcgcccatggccagatg
gcggcgggcgagctcgatgagcggatgaacgcgttttacgacggcaaggccgatgtgctt
ttggccaccacgatcgtggaaagcggcctcgatatcccgaccgcgaatacgatgatcgtg
caccgcgccgatatgttcggcctgtcgcagctctaccagatccgcggccgggtcgggcgc
tcgaagttgcgcgcctattgctatctgaccacgaaaccgcggatgccgctcaccccgcag
gcgaccaagcggctgcggcttctgggctcgctcgacagcctcggcgcggggttcaatctg
gccagccaggacctcgatctgcgcggcgcgggcaatcttctaggcgaggaacaatcgggc
catatcaaggaagtgggctacgagctctatcaggcgatgctcgaggagacgatcgccaag
ctgaaatcgggcgagctgaccgagatggccgaggatggcgaatggtcgccgcagatcaac
cttggcgtgccggtgatgatccccgaggcctatgtgcccgatctcgatgtgcggctgggg
ctttaccggcggctctcggggctgaccaccaaggtcgagctggagggcttcgccgccgaa
ctcatcgaccgcttcggggagctgcccaaagaggtcaacacgctgctcctcgtcgtgcgg
atcaaggcgatgtgcaaacgcgcccatatcgcgcggatggatgccgggccgaaaggcgcc
acggtgcagttccacgccgacaagttccccaacccggcggggctcgtcgaattcctgcaa
gcccagcgcggccaggccaagatcgccggcaacaaggtggtggtgcagcgcgattggtcc
tcggatgccgagaagatcaagggcgctttcgcgatcgccaaggatctggccgagaaggtc
atcgaggcgaagaaggctgcgaaaagctga
DBGET
integrated database retrieval system
